Analysis of interatomic Contacts of Structural Units in PDB entry:
8SKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SKR entry

There are 2 chains in PDB entry 8SKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29LYS 430
C
 ALA 29LYS 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8SKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 54Right-handed alpha
Helix 2
AA2
A
77 91Right-handed alpha
Helix 3
AA3
A
102 115Right-handed alpha
Helix 4
AA4
A
118 124Right-handed alpha
Helix 5
AA5
A
133 149Right-handed alpha
Helix 6
AA6
A
164 173Right-handed alpha
Helix 7
AA7
A
190 201Right-handed alpha
Helix 8
AA8
A
222 237Right-handed alpha
Helix 9
AA9
A
253 258Right-handed alpha
Helix 10
AB1
A
258 267Right-handed alpha
Helix 11
AB2
A
277 281Right-handed alpha
Helix 12
AB3
A
297 316Right-handed alpha
Helix 13
AB4
A
321 333Right-handed alpha
Helix 14
AB5
A
333 366Right-handed alpha
Helix 15
AB6
A
371 377Right-handed alpha
Helix 16
AB7
A
387 397Right-handed alpha
Helix 17
AB8
A
411 413Right-handed 310
Helix 18
AB9
A
417 429Right-handed alpha
Helix 19
AC1
C
42 54Right-handed alpha
Helix 20
AC2
C
77 91Right-handed alpha
Helix 21
AC3
C
102 115Right-handed alpha
Helix 22
AC4
C
118 124Right-handed alpha
Helix 23
AC5
C
133 149Right-handed alpha
Helix 24
AC6
C
164 173Right-handed alpha
Helix 25
AC7
C
190 201Right-handed alpha
Helix 26
AC8
C
222 237Right-handed alpha
Helix 27
AC9
C
253 258Right-handed alpha
Helix 28
AD1
C
258 267Right-handed alpha
Helix 29
AD2
C
277 281Right-handed alpha
Helix 30
AD3
C
297 316Right-handed alpha
Helix 31
AD4
C
321 333Right-handed alpha
Helix 32
AD5
C
333 366Right-handed alpha
Helix 33
AD6
C
371 377Right-handed alpha
Helix 34
AD7
C
387 397Right-handed alpha
Helix 35
AD8
C
411 413Right-handed 310
Helix 36
AD9
C
417 429Right-handed alpha
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There are 8 sheets in PDB entry 8SKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
400 401parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 132first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
271 276anti-parallel
Strand 4
A
239 242parallel
Strand 5
A
206 209parallel
Strand 6
A
154 158parallel
Strand 7
A
175 179parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
188 189anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
407 409anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
400 401parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 132first strand
Strand 2
C
288 294anti-parallel
Strand 3
C
271 276anti-parallel
Strand 4
C
239 242parallel
Strand 5
C
206 209parallel
Strand 6
C
154 158parallel
Strand 7
C
175 179parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 183first strand
Strand 2
C
188 189anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
381 383first strand
Strand 2
C
407 409anti-parallel
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