Analysis of interatomic Contacts of Structural Units in PDB entry:
8SKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SKS entry

There are 4 chains in PDB entry 8SKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25LYS 222
B
 LYS 25LYS 222
C
 LYS 25LYS 222
D
 LYS 25LYS 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 8SKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed 310
Helix 2
AA2
A
43 76Right-handed alpha
Helix 3
AA3
A
77 105Right-handed alpha
Helix 4
AA4
A
115 126Right-handed alpha
Helix 5
AA5
A
127 142Right-handed alpha
Helix 6
AA6
A
169 174Right-handed alpha
Helix 7
AA7
A
185 188Right-handed 310
Helix 8
AA8
A
189 194Right-handed alpha
Helix 9
AA9
A
196 205Right-handed alpha
Helix 10
AB1
A
209 222Right-handed alpha
Helix 11
AB2
B
34 39Right-handed 310
Helix 12
AB3
B
43 76Right-handed alpha
Helix 13
AB4
B
77 105Right-handed alpha
Helix 14
AB5
B
115 126Right-handed alpha
Helix 15
AB6
B
127 142Right-handed alpha
Helix 16
AB7
B
169 174Right-handed alpha
Helix 17
AB8
B
185 188Right-handed 310
Helix 18
AB9
B
189 194Right-handed alpha
Helix 19
AC1
B
196 205Right-handed alpha
Helix 20
AC2
B
209 222Right-handed alpha
Helix 21
AC3
C
34 39Right-handed 310
Helix 22
AC4
C
43 76Right-handed alpha
Helix 23
AC5
C
77 105Right-handed alpha
Helix 24
AC6
C
115 126Right-handed alpha
Helix 25
AC7
C
127 142Right-handed alpha
Helix 26
AC8
C
169 174Right-handed alpha
Helix 27
AC9
C
185 188Right-handed 310
Helix 28
AD1
C
189 194Right-handed alpha
Helix 29
AD2
C
196 205Right-handed alpha
Helix 30
AD3
C
209 222Right-handed alpha
Helix 31
AD4
D
34 39Right-handed 310
Helix 32
AD5
D
43 76Right-handed alpha
Helix 33
AD6
D
77 105Right-handed alpha
Helix 34
AD7
D
115 126Right-handed alpha
Helix 35
AD8
D
127 142Right-handed alpha
Helix 36
AD9
D
169 174Right-handed alpha
Helix 37
AE1
D
185 188Right-handed 310
Helix 38
AE2
D
189 194Right-handed alpha
Helix 39
AE3
D
196 205Right-handed alpha
Helix 40
AE4
D
209 222Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8SKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 165first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
177 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 165first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
177 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 165first strand
Strand 2
C
146 153anti-parallel
Strand 3
C
177 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 165first strand
Strand 2
D
146 153anti-parallel
Strand 3
D
177 183anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il