Analysis of interatomic Contacts of Structural Units in PDB entry:
8SKZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SKZ entry

There are 11 chains in PDB entry 8SKZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 179	SER 809
B	LYS 37	ARG 134
C	THR 10	THR 120
D	ARG 27	ALA 121
E	LYS 36	ARG 134
F	ARG 19	GLY 102
G	THR 10	THR 120
H	ARG 26	ALA 121
I	GLY 14	GLY 101
J	A 25	G 182
K	C 17	T 174

There are 67 helices in PDB entry 8SKZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	181	194	Right-handed alpha
Helix 2	AA2	A	203	219	Right-handed alpha
Helix 3	AA3	A	232	247	Right-handed alpha
Helix 4	AA4	A	258	260	Right-handed 310
Helix 5	AA5	A	261	273	Right-handed alpha
Helix 6	AA6	A	284	296	Right-handed alpha
Helix 7	AA7	A	310	317	Right-handed alpha
Helix 8	AA8	A	321	325	Right-handed 310
Helix 9	AA9	A	334	339	Right-handed 310
Helix 10	AB1	A	344	349	Right-handed alpha
Helix 11	AB2	A	350	352	Right-handed 310
Helix 12	AB3	A	369	380	Right-handed alpha
Helix 13	AB4	A	386	393	Right-handed alpha
Helix 14	AB5	A	407	425	Right-handed alpha
Helix 15	AB6	A	432	437	Right-handed alpha
Helix 16	AB7	A	453	466	Right-handed alpha
Helix 17	AB8	A	467	473	Right-handed alpha
Helix 18	AB9	A	542	553	Right-handed alpha
Helix 19	AC1	A	554	557	Right-handed 310
Helix 20	AC2	A	569	577	Right-handed alpha
Helix 21	AC3	A	577	592	Right-handed alpha
Helix 22	AC4	A	603	618	Right-handed alpha
Helix 23	AC5	A	629	642	Right-handed alpha
Helix 24	AC6	A	654	658	Right-handed alpha
Helix 25	AC7	A	677	686	Right-handed alpha
Helix 26	AC8	A	687	689	Right-handed 310
Helix 27	AC9	A	707	719	Right-handed alpha
Helix 28	AD1	A	719	727	Right-handed alpha
Helix 29	AD2	A	759	764	Right-handed alpha
Helix 30	AD3	A	768	776	Right-handed alpha
Helix 31	AD4	A	778	782	Right-handed 310
Helix 32	AD5	B	44	55	Right-handed alpha
Helix 33	AD6	B	63	77	Right-handed alpha
Helix 34	AD7	B	85	114	Right-handed alpha
Helix 35	AD8	B	120	132	Right-handed alpha
Helix 36	AD9	C	16	22	Right-handed alpha
Helix 37	AE1	C	26	37	Right-handed alpha
Helix 38	AE2	C	46	73	Right-handed alpha
Helix 39	AE3	C	79	90	Right-handed alpha
Helix 40	AE4	C	90	97	Right-handed alpha
Helix 41	AE5	C	112	116	Right-handed 310
Helix 42	AE6	D	34	46	Right-handed alpha
Helix 43	AE7	D	52	81	Right-handed alpha
Helix 44	AE8	D	87	99	Right-handed alpha
Helix 45	AE9	D	101	120	Right-handed alpha
Helix 46	AF1	E	44	55	Right-handed alpha
Helix 47	AF2	E	64	76	Right-handed alpha
Helix 48	AF3	E	87	113	Right-handed alpha
Helix 49	AF4	E	120	131	Right-handed alpha
Helix 50	AF5	F	24	29	Right-handed 310
Helix 51	AF6	F	30	41	Right-handed alpha
Helix 52	AF7	F	49	76	Right-handed alpha
Helix 53	AF8	F	82	93	Right-handed alpha
Helix 54	AF9	G	16	22	Right-handed alpha
Helix 55	AG1	G	26	37	Right-handed alpha
Helix 56	AG2	G	46	73	Right-handed alpha
Helix 57	AG3	G	79	89	Right-handed alpha
Helix 58	AG4	G	92	97	Right-handed alpha
Helix 59	AG5	G	112	116	Right-handed 310
Helix 60	AG6	H	34	43	Right-handed alpha
Helix 61	AG7	H	52	81	Right-handed alpha
Helix 62	AG8	H	87	99	Right-handed alpha
Helix 63	AG9	H	102	120	Right-handed alpha
Helix 64	AH1	I	24	29	Right-handed 310
Helix 65	AH2	I	30	42	Right-handed alpha
Helix 66	AH3	I	49	76	Right-handed alpha
Helix 67	AH4	I	82	94	Right-handed alpha

There are 11 sheets in PDB entry 8SKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	306	309	parallel
Strand 3	A	253	256	parallel
Strand 4	A	329	332	parallel
Strand 5	A	357	360	parallel
Strand 6	A	223	225	parallel
Strand 7	A	428	429	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	624	first strand
Strand 2	A	649	653	parallel
Strand 3	A	597	601	parallel
Strand 4	A	668	671	parallel
Strand 5	A	697	704	parallel
Strand 6	A	443	450	parallel
Strand 7	A	802	804	anti-parallel
Strand 8	A	798	799	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	I	80	81	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	I	45	46	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	102	first strand
Strand 2	I	96	98	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SKZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SKZ