Analysis of interatomic Contacts of Structural Units in PDB entry:
8SL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SL1 entry

There is 1 chain in PDB entry 8SL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25MET 926
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8SL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
163 168Right-handed 310
Helix 2
AA2
A
200 206Right-handed alpha
Helix 3
AA3
A
216 218Right-handed 310
Helix 4
AA4
A
228 232Right-handed alpha
Helix 5
AA5
A
268 271Right-handed 310
Helix 6
AA6
A
272 282Right-handed alpha
Helix 7
AA7
A
283 287Right-handed 310
Helix 8
AA8
A
309 326Right-handed alpha
Helix 9
AA9
A
340 346Right-handed alpha
Helix 10
AB1
A
363 367Right-handed 310
Helix 11
AB2
A
368 372Right-handed 310
Helix 12
AB3
A
435 443Right-handed alpha
Helix 13
AB4
A
485 488Right-handed 310
Helix 14
AB5
A
494 505Right-handed alpha
Helix 15
AB6
A
585 599Right-handed alpha
Helix 16
AB7
A
600 604Right-handed 310
Helix 17
AB8
A
646 650Right-handed 310
Helix 18
AB9
A
676 681Right-handed 310
Helix 19
AC1
A
743 747Right-handed 310
Helix 20
AC2
A
808 812Right-handed 310
Helix 21
AC3
A
827 831Right-handed 310
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There are 9 sheets in PDB entry 8SL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
131 138anti-parallel
Strand 4
A
52 61anti-parallel
Strand 5
A
186 195anti-parallel
Strand 6
A
220 224anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
131 138anti-parallel
Strand 4
A
52 61anti-parallel
Strand 5
A
186 195anti-parallel
Strand 6
A
27 32anti-parallel
Strand 7
A
243 246anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
102 109anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
69 76anti-parallel
Strand 5
A
170 174anti-parallel
Strand 6
A
38 40anti-parallel
Strand 7
A
233 235anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 337first strand
Strand 2
A
289 297parallel
Strand 3
A
450 453parallel
Strand 4
A
481 483parallel
Strand 5
A
464 466anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
432 434parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 621first strand
Strand 2
A
626 629anti-parallel
Strand 3
A
841 844anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 659first strand
Strand 2
A
797 804anti-parallel
Strand 3
A
729 736anti-parallel
Strand 4
A
773 776anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 727first strand
Strand 2
A
783 790anti-parallel
Strand 3
A
749 754anti-parallel
Strand 4
A
760 761anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 835first strand
Strand 2
A
819 822anti-parallel
Strand 3
A
852 858anti-parallel
Strand 4
A
872 875anti-parallel
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