Analysis of interatomic Contacts of Structural Units in PDB entry:
8SL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SL3 entry

There are 3 chains in PDB entry 8SL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 205ASN 1042
B
 SER 2ASN 340
G
 SER 8CYS 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8SL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
206 216Right-handed alpha
Helix 2
AA2
A
223 262Right-handed alpha
Helix 3
AA3
A
267 290Right-handed alpha
Helix 4
AA4
A
294 296Right-handed 310
Helix 5
AA5
A
297 319Right-handed alpha
Helix 6
AA6
A
328 342Right-handed alpha
Helix 7
AA7
A
346 369Right-handed alpha
Helix 8
AA8
A
374 436Right-handed alpha
Helix 9
AA9
A
690 696Right-handed alpha
Helix 10
AB1
A
712 727Right-handed alpha
Helix 11
AB2
A
728 737Right-handed alpha
Helix 12
AB3
A
746 755Right-handed alpha
Helix 13
AB4
A
760 783Right-handed alpha
Helix 14
AB5
A
786 812Right-handed alpha
Helix 15
AB6
A
813 816Right-handed 310
Helix 16
AB7
A
817 829Right-handed alpha
Helix 17
AB8
A
830 851Right-handed alpha
Helix 18
AB9
A
852 856Right-handed 310
Helix 19
AC1
A
860 870Right-handed alpha
Helix 20
AC2
A
872 876Right-handed 310
Helix 21
AC3
A
877 884Right-handed alpha
Helix 22
AC4
A
895 899Right-handed 310
Helix 23
AC5
A
907 924Right-handed alpha
Helix 24
AC6
A
928 949Right-handed alpha
Helix 25
AC7
A
951 967Right-handed alpha
Helix 26
AC8
A
985 1042Right-handed alpha
Helix 27
AC9
B
3 26Right-handed alpha
Helix 28
AD1
B
29 35Right-handed alpha
Helix 29
AD2
G
9 24Right-handed alpha
Helix 30
AD3
G
29 46Right-handed alpha
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There are 7 sheets in PDB entry 8SL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 330anti-parallel
Strand 4
B
317 320anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
134 140anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
175 181anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
218 222anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
284 288anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 307anti-parallel
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