Analysis of interatomic Contacts of Structural Units in PDB entry:
8SL7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SL7 entry

There are 4 chains in PDB entry 8SL7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	ALA 544
B	LYS 3	ASN 545
C	GLN 4	GLU 546
D	LYS 3	GLU 546

There are116 helices in PDB entry 8SL7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	37	Right-handed alpha
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	45	49	Right-handed 310
Helix 4	AA4	A	64	71	Right-handed alpha
Helix 5	AA5	A	80	95	Right-handed alpha
Helix 6	AA6	A	98	102	Right-handed 310
Helix 7	AA7	A	105	111	Right-handed alpha
Helix 8	AA8	A	115	123	Right-handed alpha
Helix 9	AA9	A	136	142	Right-handed alpha
Helix 10	AB1	A	150	170	Right-handed alpha
Helix 11	AB2	A	183	193	Right-handed alpha
Helix 12	AB3	A	202	208	Right-handed alpha
Helix 13	AB4	A	210	214	Right-handed 310
Helix 14	AB5	A	225	237	Right-handed alpha
Helix 15	AB6	A	238	241	Right-handed 310
Helix 16	AB7	A	259	273	Right-handed alpha
Helix 17	AB8	A	283	295	Right-handed alpha
Helix 18	AB9	A	302	313	Right-handed alpha
Helix 19	AC1	A	339	346	Right-handed alpha
Helix 20	AC2	A	357	370	Right-handed alpha
Helix 21	AC3	A	379	393	Right-handed alpha
Helix 22	AC4	A	395	416	Right-handed alpha
Helix 23	AC5	A	434	438	Right-handed alpha
Helix 24	AC6	A	443	446	Right-handed 310
Helix 25	AC7	A	447	461	Right-handed alpha
Helix 26	AC8	A	473	477	Right-handed 310
Helix 27	AC9	A	478	485	Right-handed alpha
Helix 28	AD1	A	499	516	Right-handed alpha
Helix 29	AD2	A	517	520	Right-handed 310
Helix 30	AD3	A	533	537	Right-handed 310
Helix 31	AD4	B	26	37	Right-handed alpha
Helix 32	AD5	B	40	44	Right-handed 310
Helix 33	AD6	B	45	49	Right-handed 310
Helix 34	AD7	B	63	71	Right-handed alpha
Helix 35	AD8	B	80	96	Right-handed alpha
Helix 36	AD9	B	98	102	Right-handed 310
Helix 37	AE1	B	105	111	Right-handed alpha
Helix 38	AE2	B	115	123	Right-handed alpha
Helix 39	AE3	B	136	142	Right-handed alpha
Helix 40	AE4	B	150	170	Right-handed alpha
Helix 41	AE5	B	183	192	Right-handed alpha
Helix 42	AE6	B	202	208	Right-handed alpha
Helix 43	AE7	B	210	214	Right-handed 310
Helix 44	AE8	B	225	237	Right-handed alpha
Helix 45	AE9	B	238	241	Right-handed 310
Helix 46	AF1	B	259	273	Right-handed alpha
Helix 47	AF2	B	283	295	Right-handed alpha
Helix 48	AF3	B	302	312	Right-handed alpha
Helix 49	AF4	B	339	346	Right-handed alpha
Helix 50	AF5	B	357	370	Right-handed alpha
Helix 51	AF6	B	379	393	Right-handed alpha
Helix 52	AF7	B	395	416	Right-handed alpha
Helix 53	AF8	B	434	438	Right-handed alpha
Helix 54	AF9	B	447	461	Right-handed alpha
Helix 55	AG1	B	473	477	Right-handed 310
Helix 56	AG2	B	478	483	Right-handed alpha
Helix 57	AG3	B	499	515	Right-handed alpha
Helix 58	AG4	B	516	520	Right-handed 310
Helix 59	AG5	B	533	537	Right-handed 310
Helix 60	AG6	C	26	37	Right-handed alpha
Helix 61	AG7	C	45	49	Right-handed 310
Helix 62	AG8	C	63	71	Right-handed alpha
Helix 63	AG9	C	80	96	Right-handed alpha
Helix 64	AH1	C	98	102	Right-handed 310
Helix 65	AH2	C	105	111	Right-handed alpha
Helix 66	AH3	C	115	123	Right-handed alpha
Helix 67	AH4	C	136	142	Right-handed alpha
Helix 68	AH5	C	150	168	Right-handed alpha
Helix 69	AH6	C	183	193	Right-handed alpha
Helix 70	AH7	C	202	208	Right-handed alpha
Helix 71	AH8	C	225	237	Right-handed alpha
Helix 72	AH9	C	238	241	Right-handed 310
Helix 73	AI1	C	259	273	Right-handed alpha
Helix 74	AI2	C	283	295	Right-handed alpha
Helix 75	AI3	C	302	313	Right-handed alpha
Helix 76	AI4	C	339	346	Right-handed alpha
Helix 77	AI5	C	357	370	Right-handed alpha
Helix 78	AI6	C	379	393	Right-handed alpha
Helix 79	AI7	C	395	416	Right-handed alpha
Helix 80	AI8	C	434	439	Right-handed alpha
Helix 81	AI9	C	443	446	Right-handed 310
Helix 82	AJ1	C	447	461	Right-handed alpha
Helix 83	AJ2	C	473	477	Right-handed 310
Helix 84	AJ3	C	478	485	Right-handed alpha
Helix 85	AJ4	C	499	515	Right-handed alpha
Helix 86	AJ5	C	516	520	Right-handed 310
Helix 87	AJ6	C	533	537	Right-handed 310
Helix 88	AJ7	D	26	37	Right-handed alpha
Helix 89	AJ8	D	40	44	Right-handed 310
Helix 90	AJ9	D	45	49	Right-handed 310
Helix 91	AK1	D	63	71	Right-handed alpha
Helix 92	AK2	D	80	95	Right-handed alpha
Helix 93	AK3	D	98	102	Right-handed 310
Helix 94	AK4	D	105	111	Right-handed alpha
Helix 95	AK5	D	115	123	Right-handed alpha
Helix 96	AK6	D	136	142	Right-handed alpha
Helix 97	AK7	D	150	170	Right-handed alpha
Helix 98	AK8	D	183	193	Right-handed alpha
Helix 99	AK9	D	202	208	Right-handed alpha
Helix 100	AL1	D	210	214	Right-handed 310
Helix 101	AL2	D	225	237	Right-handed alpha
Helix 102	AL3	D	238	241	Right-handed 310
Helix 103	AL4	D	259	273	Right-handed alpha
Helix 104	AL5	D	283	295	Right-handed alpha
Helix 105	AL6	D	302	313	Right-handed alpha
Helix 106	AL7	D	339	346	Right-handed alpha
Helix 107	AL8	D	357	370	Right-handed alpha
Helix 108	AL9	D	379	394	Right-handed alpha
Helix 109	AM1	D	395	416	Right-handed alpha
Helix 110	AM2	D	434	438	Right-handed alpha
Helix 111	AM3	D	447	461	Right-handed alpha
Helix 112	AM4	D	473	477	Right-handed 310
Helix 113	AM5	D	478	484	Right-handed alpha
Helix 114	AM6	D	499	516	Right-handed alpha
Helix 115	AM7	D	517	520	Right-handed 310
Helix 116	AM8	D	533	537	Right-handed 310

There are 24 sheets in PDB entry 8SL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	21	first strand
Strand 2	C	14	21	anti-parallel
Strand 3	A	62	63	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	462	463	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	316	320	anti-parallel
Strand 4	A	277	280	parallel
Strand 5	A	244	247	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	179	first strand
Strand 2	A	195	199	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	354	356	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	433	first strand
Strand 2	A	488	492	anti-parallel
Strand 3	A	465	467	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	527	first strand
Strand 2	A	539	543	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	21	first strand
Strand 2	D	14	21	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	148	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	316	320	anti-parallel
Strand 4	B	277	280	parallel
Strand 5	B	244	247	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	179	first strand
Strand 2	B	196	199	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	354	356	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	433	first strand
Strand 2	B	488	492	anti-parallel
Strand 3	B	465	467	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	523	first strand
Strand 2	B	542	543	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	462	463	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	148	first strand
Strand 2	C	331	335	anti-parallel
Strand 3	C	316	320	anti-parallel
Strand 4	C	277	280	parallel
Strand 5	C	244	247	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	196	199	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	348	first strand
Strand 2	C	354	356	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	433	first strand
Strand 2	C	488	492	anti-parallel
Strand 3	C	465	467	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	527	first strand
Strand 2	C	539	543	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	148	first strand
Strand 2	D	331	335	anti-parallel
Strand 3	D	316	320	anti-parallel
Strand 4	D	277	280	parallel
Strand 5	D	244	247	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	179	first strand
Strand 2	D	196	199	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	348	first strand
Strand 2	D	354	356	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	433	first strand
Strand 2	D	488	492	anti-parallel
Strand 3	D	465	466	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	522	527	first strand
Strand 2	D	539	543	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SL7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SL7