Analysis of interatomic Contacts of Structural Units in PDB entry:
8SL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SL9 entry

There is 1 chain in PDB entry 8SL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8SL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
51 55Right-handed 310
Helix 3
AA3
A
70 86Right-handed alpha
Helix 4
AA4
A
122 125Right-handed 310
Helix 5
AA5
A
126 137Right-handed alpha
Helix 6
AA6
A
149 158Right-handed alpha
Helix 7
AA7
A
179 183Right-handed 310
Helix 8
AA8
A
190 204Right-handed alpha
Helix 9
AA9
A
223 242Right-handed alpha
Helix 10
AB1
A
257 269Right-handed alpha
Helix 11
AB2
A
270 272Right-handed 310
Helix 12
AB3
A
282 294Right-handed alpha
Helix 13
AB4
A
307 311Right-handed 310
Helix 14
AB5
A
313 315Right-handed 310
Helix 15
AB6
A
316 335Right-handed alpha
Helix 16
AB7
A
338 340Right-handed 310
Helix 17
AB8
A
353 363Right-handed alpha
Helix 18
AB9
A
363 372Right-handed alpha
Helix 19
AC1
A
382 387Right-handed alpha
Helix 20
AC2
A
393 411Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8SL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
1 9anti-parallel
Strand 4
A
100 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
40 42anti-parallel
Strand 4
A
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 177first strand
Strand 2
A
207 211parallel
Strand 3
A
250 254parallel
Strand 4
A
274 276parallel
Strand 5
A
296 300parallel
Strand 6
A
342 345parallel
Strand 7
A
374 377parallel
Strand 8
A
415 418parallel
Strand 9
A
171 177parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il