Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SLB entry

There are 3 chains in PDB entry 8SLB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9GLU 266
H
 GLU 4PRO 232
L
 SER 1GLU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8SLB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 56Right-handed 310
Helix 2
AA2
A
69 81Right-handed alpha
Helix 3
AA3
A
83 92Right-handed alpha
Helix 4
AA4
A
147 156Right-handed alpha
Helix 5
AA5
A
160 164Right-handed 310
Helix 6
AA6
A
165 198Right-handed alpha
Helix 7
AA7
A
204 224Right-handed alpha
Helix 8
AA8
A
224 235Right-handed alpha
Helix 9
AA9
A
244 246Right-handed 310
Helix 10
AB1
A
247 258Right-handed alpha
Helix 11
AB2
H
31 34Right-handed 310
Helix 12
AB3
H
90 94Right-handed 310
Helix 13
AB4
H
175 177Right-handed 310
Helix 14
AB5
H
204 208Right-handed 310
Helix 15
AB6
H
220 223Right-handed 310
Helix 16
AB7
L
80 84Right-handed 310
Helix 17
AB8
L
122 128Right-handed alpha
Helix 18
AB9
L
184 190Right-handed alpha
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There are 13 sheets in PDB entry 8SLB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
28 34anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
135 140parallel
Strand 5
A
123 131anti-parallel
Strand 6
A
106 114anti-parallel
Strand 7
A
98 101anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
21 28anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
71 76anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
127 131parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
36 42anti-parallel
Strand 5
H
49 55anti-parallel
Strand 6
H
60 63anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
127 131parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
119 123anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
106 107first strand
Strand 2
H
114 115anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
139 143first strand
Strand 2
H
155 164anti-parallel
Strand 3
H
195 203anti-parallel
Strand 4
H
182 184anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
139 143first strand
Strand 2
H
155 164anti-parallel
Strand 3
H
195 203anti-parallel
Strand 4
H
188 189anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
170 173first strand
Strand 2
H
214 219anti-parallel
Strand 3
H
224 229anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 8first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
98 99anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
206 211anti-parallel
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