Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SLC entry

There are 6 chains in PDB entry 8SLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 64
A
 VAL 68HIS 231
B
 ALA 1PHE 64
B
 VAL 68HIS 231
C
 ASP 1GLY 127
D
 ASP 1ARG 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8SLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed 310
Helix 2
AA2
A
56 61Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
75 81Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
B
3 9Right-handed 310
Helix 7
AA7
B
56 61Right-handed 310
Helix 8
AA8
B
68 72Right-handed 310
Helix 9
AA9
B
75 81Right-handed 310
Helix 10
AB1
B
82 87Right-handed alpha
Helix 11
AB2
C
62 65Right-handed 310
Helix 12
AB3
C
87 91Right-handed 310
Helix 13
AB4
C
110 114Right-handed 310
Helix 14
AB5
D
62 65Right-handed 310
Helix 15
AB6
D
87 91Right-handed 310
Helix 16
AB7
D
110 114Right-handed 310
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There are 8 sheets in PDB entry 8SLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
217 227anti-parallel
Strand 5
A
199 208anti-parallel
Strand 6
A
148 155anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 114anti-parallel
Strand 11
A
119 128anti-parallel
Strand 12
A
11 22parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
217 227anti-parallel
Strand 5
B
199 208anti-parallel
Strand 6
B
148 155anti-parallel
Strand 7
B
160 170anti-parallel
Strand 8
B
176 187anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 114anti-parallel
Strand 11
B
119 128anti-parallel
Strand 12
B
11 22parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 7first strand
Strand 2
C
18 26anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 72anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
121 125parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 52anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
121 125parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
116 117anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 72anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
121 125parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
46 52anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
121 125parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
116 117anti-parallel
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