Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SLD entry

There is 1 chain in PDB entry 8SLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8SLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
35 54Right-handed alpha
Helix 3
AA3
A
165 179Right-handed alpha
Helix 4
AA4
A
220 222Right-handed 310
Helix 5
AA5
A
223 242Right-handed alpha
Helix 6
AA6
A
245 247Right-handed 310
Helix 7
AA7
A
291 302Right-handed alpha
Helix 8
AA8
A
327 338Right-handed alpha
Helix 9
AA9
A
379 392Right-handed alpha
Helix 10
AB1
A
403 414Right-handed alpha
Helix 11
AB2
A
425 430Right-handed alpha
Helix 12
AB3
A
449 459Right-handed alpha
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There are 4 sheets in PDB entry 8SLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
33 34anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
185 192parallel
Strand 3
A
211 219anti-parallel
Strand 4
A
319 326anti-parallel
Strand 5
A
280 290anti-parallel
Strand 6
A
265 272anti-parallel
Strand 7
A
249 253anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
354 357anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
368 372parallel
Strand 3
A
418 422parallel
Strand 4
A
431 436anti-parallel
Strand 5
A
442 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il