Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SLF entry

There are 2 chains in PDB entry 8SLF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	CYS 461
B	ALA 2	CYS 461

There are 33 helices in PDB entry 8SLF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	22	26	Right-handed 310
Helix 3	AA3	A	35	54	Right-handed alpha
Helix 4	AA4	A	70	77	Right-handed alpha
Helix 5	AA5	A	78	83	Right-handed alpha
Helix 6	AA6	A	164	170	Right-handed alpha
Helix 7	AA7	A	171	180	Right-handed alpha
Helix 8	AA8	A	220	222	Right-handed 310
Helix 9	AA9	A	223	242	Right-handed alpha
Helix 10	AB1	A	245	247	Right-handed 310
Helix 11	AB2	A	291	302	Right-handed alpha
Helix 12	AB3	A	327	338	Right-handed alpha
Helix 13	AB4	A	378	392	Right-handed alpha
Helix 14	AB5	A	403	413	Right-handed alpha
Helix 15	AB6	A	425	430	Right-handed alpha
Helix 16	AB7	A	447	459	Right-handed alpha
Helix 17	AB8	B	3	15	Right-handed alpha
Helix 18	AB9	B	22	26	Right-handed 310
Helix 19	AC1	B	35	54	Right-handed alpha
Helix 20	AC2	B	70	77	Right-handed alpha
Helix 21	AC3	B	78	83	Right-handed alpha
Helix 22	AC4	B	164	170	Right-handed alpha
Helix 23	AC5	B	171	179	Right-handed alpha
Helix 24	AC6	B	220	222	Right-handed 310
Helix 25	AC7	B	223	242	Right-handed alpha
Helix 26	AC8	B	245	247	Right-handed 310
Helix 27	AC9	B	255	259	Right-handed 310
Helix 28	AD1	B	291	302	Right-handed alpha
Helix 29	AD2	B	327	338	Right-handed alpha
Helix 30	AD3	B	378	392	Right-handed alpha
Helix 31	AD4	B	403	413	Right-handed alpha
Helix 32	AD5	B	425	430	Right-handed alpha
Helix 33	AD6	B	447	459	Right-handed alpha

There are 13 sheets in PDB entry 8SLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	32	34	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	185	194	parallel
Strand 3	A	209	219	anti-parallel
Strand 4	A	319	326	anti-parallel
Strand 5	A	280	290	anti-parallel
Strand 6	A	265	272	anti-parallel
Strand 7	A	249	253	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	157	160	anti-parallel
Strand 3	A	144	147	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	309	first strand
Strand 2	A	314	316	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	354	357	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	398	first strand
Strand 2	A	368	372	parallel
Strand 3	A	418	422	parallel
Strand 4	A	431	436	anti-parallel
Strand 5	A	442	446	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	32	34	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	185	194	parallel
Strand 3	B	209	219	anti-parallel
Strand 4	B	319	326	anti-parallel
Strand 5	B	280	288	anti-parallel
Strand 6	B	265	272	anti-parallel
Strand 7	B	249	253	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	138	141	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	157	160	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	314	316	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	345	first strand
Strand 2	B	351	357	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	368	372	parallel
Strand 3	B	418	422	parallel
Strand 4	B	431	436	anti-parallel
Strand 5	B	442	446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SLF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLF