Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SLG entry

There are 2 chains in PDB entry 8SLG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -19	CYS 461
B	ALA 2	CYS 461

There are 36 helices in PDB entry 8SLG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	22	26	Right-handed 310
Helix 3	AA3	A	35	54	Right-handed alpha
Helix 4	AA4	A	70	77	Right-handed alpha
Helix 5	AA5	A	78	83	Right-handed alpha
Helix 6	AA6	A	153	155	Right-handed 310
Helix 7	AA7	A	164	170	Right-handed alpha
Helix 8	AA8	A	171	180	Right-handed alpha
Helix 9	AA9	A	220	222	Right-handed 310
Helix 10	AB1	A	223	242	Right-handed alpha
Helix 11	AB2	A	245	247	Right-handed 310
Helix 12	AB3	A	255	259	Right-handed 310
Helix 13	AB4	A	291	302	Right-handed alpha
Helix 14	AB5	A	327	338	Right-handed alpha
Helix 15	AB6	A	379	392	Right-handed alpha
Helix 16	AB7	A	403	413	Right-handed alpha
Helix 17	AB8	A	425	430	Right-handed alpha
Helix 18	AB9	A	447	459	Right-handed alpha
Helix 19	AC1	B	3	15	Right-handed alpha
Helix 20	AC2	B	22	26	Right-handed 310
Helix 21	AC3	B	35	54	Right-handed alpha
Helix 22	AC4	B	71	77	Right-handed alpha
Helix 23	AC5	B	78	83	Right-handed alpha
Helix 24	AC6	B	99	104	Right-handed alpha
Helix 25	AC7	B	164	170	Right-handed alpha
Helix 26	AC8	B	171	180	Right-handed alpha
Helix 27	AC9	B	220	222	Right-handed 310
Helix 28	AD1	B	223	242	Right-handed alpha
Helix 29	AD2	B	245	247	Right-handed 310
Helix 30	AD3	B	255	259	Right-handed 310
Helix 31	AD4	B	291	302	Right-handed alpha
Helix 32	AD5	B	327	338	Right-handed alpha
Helix 33	AD6	B	379	392	Right-handed alpha
Helix 34	AD7	B	403	414	Right-handed alpha
Helix 35	AD8	B	425	430	Right-handed alpha
Helix 36	AD9	B	449	459	Right-handed alpha

There are 14 sheets in PDB entry 8SLG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	32	34	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	185	194	parallel
Strand 3	A	209	219	anti-parallel
Strand 4	A	319	326	anti-parallel
Strand 5	A	281	288	anti-parallel
Strand 6	A	265	271	anti-parallel
Strand 7	A	249	253	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	138	141	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	157	159	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	309	first strand
Strand 2	A	314	316	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	354	357	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	398	first strand
Strand 2	A	368	372	parallel
Strand 3	A	418	422	parallel
Strand 4	A	431	436	anti-parallel
Strand 5	A	442	446	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	32	34	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	185	194	parallel
Strand 3	B	209	219	anti-parallel
Strand 4	B	319	326	anti-parallel
Strand 5	B	281	288	anti-parallel
Strand 6	B	265	271	anti-parallel
Strand 7	B	249	253	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	138	141	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	157	159	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	314	316	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	345	first strand
Strand 2	B	351	357	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	368	372	parallel
Strand 3	B	418	422	parallel
Strand 4	B	431	436	anti-parallel
Strand 5	B	442	446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SLG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLG