Analysis of interatomic Contacts of Structural Units in PDB entry:
8SLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SLJ entry

There are 3 chains in PDB entry 8SLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PHE 251
B
 SER 0PHE 251
C
 SER 0PHE 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8SLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 52Right-handed alpha
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
76 93Right-handed alpha
Helix 4
AA4
A
107 119Right-handed alpha
Helix 5
AA5
A
133 142Right-handed alpha
Helix 6
AA6
A
161 165Right-handed 310
Helix 7
AA7
A
171 179Right-handed alpha
Helix 8
AA8
A
181 187Right-handed alpha
Helix 9
AA9
A
206 216Right-handed alpha
Helix 10
AB1
A
233 248Right-handed alpha
Helix 11
AB2
B
40 53Right-handed alpha
Helix 12
AB3
B
71 75Right-handed 310
Helix 13
AB4
B
76 93Right-handed alpha
Helix 14
AB5
B
107 119Right-handed alpha
Helix 15
AB6
B
133 142Right-handed alpha
Helix 16
AB7
B
161 165Right-handed 310
Helix 17
AB8
B
171 179Right-handed alpha
Helix 18
AB9
B
181 187Right-handed alpha
Helix 19
AC1
B
205 216Right-handed alpha
Helix 20
AC2
B
234 248Right-handed alpha
Helix 21
AC3
C
40 52Right-handed alpha
Helix 22
AC4
C
71 75Right-handed 310
Helix 23
AC5
C
76 93Right-handed alpha
Helix 24
AC6
C
107 119Right-handed alpha
Helix 25
AC7
C
134 142Right-handed alpha
Helix 26
AC8
C
161 165Right-handed 310
Helix 27
AC9
C
171 179Right-handed alpha
Helix 28
AD1
C
181 187Right-handed alpha
Helix 29
AD2
C
205 216Right-handed alpha
Helix 30
AD3
C
234 248Right-handed alpha
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There are 9 sheets in PDB entry 8SLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
11 18anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
97 105parallel
Strand 6
A
125 129parallel
Strand 7
A
193 198parallel
Strand 8
A
219 224parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
147 148anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
168 170anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 8first strand
Strand 2
B
11 18anti-parallel
Strand 3
B
55 60anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
97 105parallel
Strand 6
B
125 129parallel
Strand 7
B
193 198parallel
Strand 8
B
219 224parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
147 148anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
168 170anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
11 18anti-parallel
Strand 3
C
55 60anti-parallel
Strand 4
C
25 31parallel
Strand 5
C
97 105parallel
Strand 6
C
125 129parallel
Strand 7
C
193 198parallel
Strand 8
C
219 224parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
147 148anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 159first strand
Strand 2
C
168 170anti-parallel
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