Analysis of interatomic Contacts of Structural Units in PDB entry:
8SM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SM0 entry

There are 2 chains in PDB entry 8SM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 1	VAL 129
G	VAL 7	PRO 425

There are 2 helices in PDB entry 8SM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	87	90	Right-handed 310
Helix 2	AA2	G	272	276	Right-handed 310

There are 10 sheets in PDB entry 8SM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	26	31	anti-parallel
Strand 3	C	42	46	anti-parallel
Strand 4	C	54	55	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	38	first strand
Strand 2	C	61	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	88	89	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	93	98	anti-parallel
Strand 3	C	109	112	anti-parallel
Strand 4	C	118	119	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	125	127	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	16	first strand
Strand 2	G	139	151	parallel
Strand 3	G	123	133	anti-parallel
Strand 4	G	44	54	anti-parallel
Strand 5	G	57	68	anti-parallel
Strand 6	G	80	82	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	30	first strand
Strand 2	G	101	107	anti-parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	75	76	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	167	first strand
Strand 2	G	297	305	parallel
Strand 3	G	279	286	anti-parallel
Strand 4	G	197	204	anti-parallel
Strand 5	G	207	213	anti-parallel
Strand 6	G	224	232	anti-parallel
Strand 7	G	242	247	anti-parallel
Strand 8	G	260	267	anti-parallel
Strand 9	G	178	187	anti-parallel
Strand 10	G	172	175	anti-parallel
Strand 11	G	297	305	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	318	324	first strand
Strand 2	G	415	423	parallel
Strand 3	G	401	409	anti-parallel
Strand 4	G	346	352	anti-parallel
Strand 5	G	365	367	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	329	333	first strand
Strand 2	G	389	393	anti-parallel
Strand 3	G	379	383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SM0