Analysis of interatomic Contacts of Structural Units in PDB entry:
8SM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SM3 entry

There are 2 chains in PDB entry 8SM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0SER 575
B
 SER 2ILE 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8SM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 47Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
78 82Right-handed 310
Helix 5
AA5
A
83 94Right-handed alpha
Helix 6
AA6
A
95 97Right-handed 310
Helix 7
AA7
A
144 148Right-handed alpha
Helix 8
AA8
A
159 168Right-handed alpha
Helix 9
AA9
A
182 201Right-handed alpha
Helix 10
AB1
A
207 220Right-handed alpha
Helix 11
AB2
A
260 278Right-handed alpha
Helix 12
AB3
A
295 308Right-handed alpha
Helix 13
AB4
A
321 326Right-handed 310
Helix 14
AB5
A
355 357Right-handed 310
Helix 15
AB6
A
358 368Right-handed alpha
Helix 16
AB7
A
380 395Right-handed alpha
Helix 17
AB8
A
413 423Right-handed alpha
Helix 18
AB9
A
447 457Right-handed alpha
Helix 19
AC1
A
475 493Right-handed alpha
Helix 20
AC2
A
493 503Right-handed alpha
Helix 21
AC3
A
511 520Right-handed alpha
Helix 22
AC4
A
520 529Right-handed alpha
Helix 23
AC5
A
532 538Right-handed alpha
Helix 24
AC6
A
540 552Right-handed alpha
Helix 25
AC7
A
553 563Right-handed alpha
Helix 26
AC8
A
566 574Right-handed alpha
Helix 27
AC9
B
3 9Right-handed alpha
Helix 28
AD1
B
21 38Right-handed alpha
Helix 29
AD2
B
50 62Right-handed alpha
Helix 30
AD3
B
73 81Right-handed alpha
Helix 31
AD4
B
81 91Right-handed alpha
Helix 32
AD5
B
109 119Right-handed alpha
Helix 33
AD6
B
132 145Right-handed alpha
Helix 34
AD7
B
145 155Right-handed alpha
Helix 35
AD8
B
163 167Right-handed 310
Helix 36
AD9
B
168 181Right-handed alpha
Helix 37
AE1
B
203 214Right-handed alpha
Helix 38
AE2
B
229 238Right-handed alpha
Helix 39
AE3
B
264 275Right-handed alpha
Helix 40
AE4
B
291 305Right-handed alpha
Helix 41
AE5
B
323 336Right-handed alpha
Helix 42
AE6
B
340 348Right-handed alpha
Helix 43
AE7
B
353 365Right-handed alpha
Helix 44
AE8
B
366 369Right-handed 310
Helix 45
AE9
B
372 388Right-handed alpha
Helix 46
AF1
B
393 406Right-handed alpha
Helix 47
AF2
B
410 414Right-handed 310
Helix 48
AF3
B
441 443Right-handed 310
Helix 49
AF4
B
450 461Right-handed alpha
Helix 50
AF5
B
471 485Right-handed alpha
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There are 8 sheets in PDB entry 8SM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 20first strand
Strand 2
A
3 11anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
104 111anti-parallel
Strand 5
A
123 127anti-parallel
Strand 6
A
134 135anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
282 288parallel
Strand 3
A
315 318parallel
Strand 4
A
24 29parallel
Strand 5
A
331 336parallel
Strand 6
A
344 349anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
142 143anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 407first strand
Strand 2
A
374 378parallel
Strand 3
A
426 431parallel
Strand 4
A
505 507parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
444 446anti-parallel
Strand 3
A
465 466anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
43 48parallel
Strand 3
B
156 161parallel
Strand 4
B
185 190parallel
Strand 5
B
13 16parallel
Strand 6
B
218 221parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
122 124parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
421 424parallel
Strand 3
B
285 289parallel
Strand 4
B
435 439parallel
Strand 5
B
465 468parallel
Strand 6
B
256 259parallel
Strand 7
B
492 493parallel
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