Analysis of interatomic Contacts of Structural Units in PDB entry:
8SM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SM8 entry

There are 4 chains in PDB entry 8SM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	HIS 2	ASP 345
A	HIS 2	ASP 345
D	ILE 3	ASP 345
J	GLY 0	LEU 344

There are 70 helices in PDB entry 8SM8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	14	22	Right-handed 310
Helix 2	AA2	G	25	32	Right-handed alpha
Helix 3	AA3	G	66	74	Right-handed alpha
Helix 4	AA4	G	74	79	Right-handed alpha
Helix 5	AA5	G	90	94	Right-handed 310
Helix 6	AA6	G	97	116	Right-handed alpha
Helix 7	AA7	G	117	120	Right-handed 310
Helix 8	AA8	G	133	145	Right-handed alpha
Helix 9	AA9	G	165	167	Right-handed 310
Helix 10	AB1	G	168	178	Right-handed alpha
Helix 11	AB2	G	199	206	Right-handed alpha
Helix 12	AB3	G	206	221	Right-handed alpha
Helix 13	AB4	G	222	227	Right-handed alpha
Helix 14	AB5	G	241	257	Right-handed alpha
Helix 15	AB6	G	266	274	Right-handed alpha
Helix 16	AB7	G	286	298	Right-handed alpha
Helix 17	AB8	G	326	335	Right-handed alpha
Helix 18	AB9	G	335	343	Right-handed alpha
Helix 19	AC1	A	14	22	Right-handed 310
Helix 20	AC2	A	25	33	Right-handed alpha
Helix 21	AC3	A	66	74	Right-handed alpha
Helix 22	AC4	A	90	94	Right-handed 310
Helix 23	AC5	A	97	116	Right-handed alpha
Helix 24	AC6	A	117	120	Right-handed 310
Helix 25	AC7	A	133	145	Right-handed alpha
Helix 26	AC8	A	165	167	Right-handed 310
Helix 27	AC9	A	168	178	Right-handed alpha
Helix 28	AD1	A	199	221	Right-handed alpha
Helix 29	AD2	A	222	227	Right-handed alpha
Helix 30	AD3	A	241	257	Right-handed alpha
Helix 31	AD4	A	258	260	Right-handed 310
Helix 32	AD5	A	266	274	Right-handed alpha
Helix 33	AD6	A	286	298	Right-handed alpha
Helix 34	AD7	A	326	335	Right-handed alpha
Helix 35	AD8	A	335	343	Right-handed alpha
Helix 36	AD9	D	14	22	Right-handed 310
Helix 37	AE1	D	25	32	Right-handed alpha
Helix 38	AE2	D	66	74	Right-handed alpha
Helix 39	AE3	D	90	94	Right-handed 310
Helix 40	AE4	D	97	116	Right-handed alpha
Helix 41	AE5	D	117	120	Right-handed 310
Helix 42	AE6	D	133	146	Right-handed alpha
Helix 43	AE7	D	165	167	Right-handed 310
Helix 44	AE8	D	168	178	Right-handed alpha
Helix 45	AE9	D	199	206	Right-handed alpha
Helix 46	AF1	D	206	221	Right-handed alpha
Helix 47	AF2	D	222	227	Right-handed alpha
Helix 48	AF3	D	241	257	Right-handed alpha
Helix 49	AF4	D	258	260	Right-handed 310
Helix 50	AF5	D	266	274	Right-handed alpha
Helix 51	AF6	D	286	298	Right-handed alpha
Helix 52	AF7	D	316	320	Right-handed 310
Helix 53	AF8	D	326	335	Right-handed alpha
Helix 54	AF9	D	335	343	Right-handed alpha
Helix 55	AG1	J	14	22	Right-handed 310
Helix 56	AG2	J	25	33	Right-handed alpha
Helix 57	AG3	J	66	74	Right-handed alpha
Helix 58	AG4	J	90	94	Right-handed 310
Helix 59	AG5	J	97	116	Right-handed alpha
Helix 60	AG6	J	117	120	Right-handed 310
Helix 61	AG7	J	133	146	Right-handed alpha
Helix 62	AG8	J	165	167	Right-handed 310
Helix 63	AG9	J	168	178	Right-handed alpha
Helix 64	AH1	J	199	221	Right-handed alpha
Helix 65	AH2	J	222	227	Right-handed alpha
Helix 66	AH3	J	241	257	Right-handed alpha
Helix 67	AH4	J	266	274	Right-handed alpha
Helix 68	AH5	J	286	298	Right-handed alpha
Helix 69	AH6	J	326	335	Right-handed alpha
Helix 70	AH7	J	335	343	Right-handed alpha

There are 4 sheets in PDB entry 8SM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	82	85	parallel
Strand 3	G	123	127	parallel
Strand 4	G	150	157	parallel
Strand 5	G	181	186	parallel
Strand 6	G	232	234	parallel
Strand 7	G	275	278	parallel
Strand 8	G	303	304	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	82	85	parallel
Strand 3	A	123	127	parallel
Strand 4	A	150	157	parallel
Strand 5	A	181	186	parallel
Strand 6	A	232	234	parallel
Strand 7	A	275	278	parallel
Strand 8	A	303	304	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	82	85	parallel
Strand 3	D	123	128	parallel
Strand 4	D	150	157	parallel
Strand 5	D	181	186	parallel
Strand 6	D	232	234	parallel
Strand 7	D	275	278	parallel
Strand 8	D	303	304	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	8	first strand
Strand 2	J	82	85	parallel
Strand 3	J	123	127	parallel
Strand 4	J	150	157	parallel
Strand 5	J	181	186	parallel
Strand 6	J	232	234	parallel
Strand 7	J	275	278	parallel
Strand 8	J	303	304	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SM8