Analysis of interatomic Contacts of Structural Units in PDB entry:
8SM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SM9 entry

There are 4 chains in PDB entry 8SM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 LYS 29LEU 372
B
 LYS 29LEU 372
D
 LYS 29LEU 372
H
 LYS 29LEU 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8SM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
41 49Right-handed 310
Helix 2
AA2
F
50 59Right-handed alpha
Helix 3
AA3
F
80 84Right-handed 310
Helix 4
AA4
F
94 102Right-handed alpha
Helix 5
AA5
F
117 122Right-handed alpha
Helix 6
AA6
F
126 145Right-handed alpha
Helix 7
AA7
F
146 149Right-handed 310
Helix 8
AA8
F
161 173Right-handed alpha
Helix 9
AA9
F
192 194Right-handed 310
Helix 10
AB1
F
195 205Right-handed alpha
Helix 11
AB2
F
219 223Right-handed 310
Helix 12
AB3
F
227 235Right-handed alpha
Helix 13
AB4
F
235 249Right-handed alpha
Helix 14
AB5
F
250 255Right-handed alpha
Helix 15
AB6
F
269 285Right-handed alpha
Helix 16
AB7
F
286 288Right-handed 310
Helix 17
AB8
F
294 302Right-handed alpha
Helix 18
AB9
F
314 326Right-handed alpha
Helix 19
AC1
F
344 348Right-handed 310
Helix 20
AC2
F
354 363Right-handed alpha
Helix 21
AC3
F
363 370Right-handed alpha
Helix 22
AC4
B
41 49Right-handed 310
Helix 23
AC5
B
50 59Right-handed alpha
Helix 24
AC6
B
80 84Right-handed 310
Helix 25
AC7
B
94 102Right-handed alpha
Helix 26
AC8
B
117 122Right-handed alpha
Helix 27
AC9
B
126 145Right-handed alpha
Helix 28
AD1
B
146 149Right-handed 310
Helix 29
AD2
B
161 173Right-handed alpha
Helix 30
AD3
B
192 194Right-handed 310
Helix 31
AD4
B
195 205Right-handed alpha
Helix 32
AD5
B
219 223Right-handed 310
Helix 33
AD6
B
227 235Right-handed alpha
Helix 34
AD7
B
235 249Right-handed alpha
Helix 35
AD8
B
250 255Right-handed alpha
Helix 36
AD9
B
269 285Right-handed alpha
Helix 37
AE1
B
286 288Right-handed 310
Helix 38
AE2
B
294 302Right-handed alpha
Helix 39
AE3
B
314 326Right-handed alpha
Helix 40
AE4
B
344 348Right-handed 310
Helix 41
AE5
B
354 363Right-handed alpha
Helix 42
AE6
B
363 370Right-handed alpha
Helix 43
AE7
D
41 49Right-handed 310
Helix 44
AE8
D
50 59Right-handed alpha
Helix 45
AE9
D
80 84Right-handed 310
Helix 46
AF1
D
94 102Right-handed alpha
Helix 47
AF2
D
117 122Right-handed alpha
Helix 48
AF3
D
126 145Right-handed alpha
Helix 49
AF4
D
146 149Right-handed 310
Helix 50
AF5
D
161 173Right-handed alpha
Helix 51
AF6
D
192 194Right-handed 310
Helix 52
AF7
D
195 205Right-handed alpha
Helix 53
AF8
D
219 223Right-handed 310
Helix 54
AF9
D
227 235Right-handed alpha
Helix 55
AG1
D
235 249Right-handed alpha
Helix 56
AG2
D
250 255Right-handed alpha
Helix 57
AG3
D
269 285Right-handed alpha
Helix 58
AG4
D
286 288Right-handed 310
Helix 59
AG5
D
294 302Right-handed alpha
Helix 60
AG6
D
314 326Right-handed alpha
Helix 61
AG7
D
354 363Right-handed alpha
Helix 62
AG8
D
363 370Right-handed alpha
Helix 63
AG9
H
41 49Right-handed 310
Helix 64
AH1
H
50 59Right-handed alpha
Helix 65
AH2
H
80 84Right-handed 310
Helix 66
AH3
H
94 102Right-handed alpha
Helix 67
AH4
H
117 122Right-handed alpha
Helix 68
AH5
H
126 145Right-handed alpha
Helix 69
AH6
H
146 149Right-handed 310
Helix 70
AH7
H
161 173Right-handed alpha
Helix 71
AH8
H
192 194Right-handed 310
Helix 72
AH9
H
195 204Right-handed alpha
Helix 73
AI1
H
219 223Right-handed 310
Helix 74
AI2
H
227 235Right-handed alpha
Helix 75
AI3
H
235 249Right-handed alpha
Helix 76
AI4
H
250 255Right-handed alpha
Helix 77
AI5
H
269 285Right-handed alpha
Helix 78
AI6
H
286 288Right-handed 310
Helix 79
AI7
H
294 302Right-handed alpha
Helix 80
AI8
H
314 326Right-handed alpha
Helix 81
AI9
H
354 363Right-handed alpha
Helix 82
AJ1
H
363 370Right-handed alpha
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There are 4 sheets in PDB entry 8SM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 35first strand
Strand 2
F
110 113parallel
Strand 3
F
152 156parallel
Strand 4
F
178 182parallel
Strand 5
F
208 211parallel
Strand 6
F
260 262parallel
Strand 7
F
303 306parallel
Strand 8
F
331 332parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
110 113parallel
Strand 3
B
152 157parallel
Strand 4
B
178 182parallel
Strand 5
B
208 212parallel
Strand 6
B
260 263parallel
Strand 7
B
303 306parallel
Strand 8
B
331 332parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 35first strand
Strand 2
D
110 113parallel
Strand 3
D
152 157parallel
Strand 4
D
178 182parallel
Strand 5
D
208 212parallel
Strand 6
D
260 263parallel
Strand 7
D
303 306parallel
Strand 8
D
331 332parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
31 35first strand
Strand 2
H
110 113parallel
Strand 3
H
152 157parallel
Strand 4
H
178 182parallel
Strand 5
H
208 212parallel
Strand 6
H
260 263parallel
Strand 7
H
303 306parallel
Strand 8
H
331 332parallel
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