Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SMC entry

There is 1 chain in PDB entry 8SMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 1329	GLU 2527

There are 33 helices in PDB entry 8SMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1346	1356	Right-handed alpha
Helix 2	AA2	C	1398	1405	Right-handed alpha
Helix 3	AA3	C	1424	1442	Right-handed alpha
Helix 4	AA4	C	1458	1470	Right-handed alpha
Helix 5	AA5	C	1498	1503	Right-handed alpha
Helix 6	AA6	C	1512	1516	Right-handed 310
Helix 7	AA7	C	1524	1538	Right-handed alpha
Helix 8	AA8	C	1550	1561	Right-handed alpha
Helix 9	AA9	C	1568	1580	Right-handed alpha
Helix 10	AB1	C	1587	1591	Right-handed 310
Helix 11	AB2	C	1599	1605	Right-handed alpha
Helix 12	AB3	C	1606	1612	Right-handed alpha
Helix 13	AB4	C	1704	1712	Right-handed alpha
Helix 14	AB5	C	1770	1791	Right-handed alpha
Helix 15	AB6	C	1792	1796	Right-handed 310
Helix 16	AB7	C	1826	1837	Right-handed alpha
Helix 17	AB8	C	1871	1875	Right-handed 310
Helix 18	AB9	C	1913	1925	Right-handed alpha
Helix 19	AC1	C	1955	1960	Right-handed alpha
Helix 20	AC2	C	1969	1974	Right-handed alpha
Helix 21	AC3	C	1976	1987	Right-handed alpha
Helix 22	AC4	C	2040	2045	Right-handed alpha
Helix 23	AC5	C	2055	2068	Right-handed alpha
Helix 24	AC6	C	2071	2077	Right-handed alpha
Helix 25	AC7	C	2079	2085	Right-handed alpha
Helix 26	AC8	C	2094	2099	Right-handed alpha
Helix 27	AC9	C	2107	2114	Right-handed alpha
Helix 28	AD1	C	2124	2130	Right-handed alpha
Helix 29	AD2	C	2276	2282	Right-handed 310
Helix 30	AD3	C	2307	2315	Right-handed 310
Helix 31	AD4	C	2348	2352	Right-handed 310
Helix 32	AD5	C	2391	2396	Right-handed 310
Helix 33	AD6	C	2499	2527	Right-handed alpha

There are 17 sheets in PDB entry 8SMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1330	1331	first strand
Strand 2	C	1522	1523	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1372	1373	first strand
Strand 2	C	1393	1394	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1547	1549	first strand
Strand 2	C	1595	1597	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1761	1768	first strand
Strand 2	C	1690	1697	anti-parallel
Strand 3	C	1809	1812	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1739	1743	first strand
Strand 2	C	1746	1749	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1840	1841	first strand
Strand 2	C	1849	1850	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1891	1893	first strand
Strand 2	C	1903	1908	anti-parallel
Strand 3	C	1944	1948	anti-parallel
Strand 4	C	1935	1937	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1990	1991	first strand
Strand 2	C	2022	2023	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2000	2002	first strand
Strand 2	C	2013	2015	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2140	2144	first strand
Strand 2	C	2492	2496	anti-parallel
Strand 3	C	2466	2475	anti-parallel
Strand 4	C	2454	2458	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2140	2144	first strand
Strand 2	C	2492	2496	anti-parallel
Strand 3	C	2466	2475	anti-parallel
Strand 4	C	2461	2463	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2154	2156	first strand
Strand 2	C	2168	2171	anti-parallel
Strand 3	C	2178	2181	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2214	2216	first strand
Strand 2	C	2226	2228	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2245	2247	first strand
Strand 2	C	2264	2267	anti-parallel
Strand 3	C	2271	2274	anti-parallel
Strand 4	C	2291	2292	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2322	2325	first strand
Strand 2	C	2334	2337	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2363	2365	first strand
Strand 2	C	2372	2376	anti-parallel
Strand 3	C	2383	2388	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2416	2419	first strand
Strand 2	C	2425	2429	anti-parallel
Strand 3	C	2433	2435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMC