Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SMK entry

There are 6 chains in PDB entry 8SMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	PRO 663
B	GLU 1	PRO 221
C	ASP 1	CYS 215
D	GLY 4	PRO 663
E	GLU 1	PRO 221
F	ASP 1	CYS 215

There are 46 helices in PDB entry 8SMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed 310
Helix 2	AA2	A	192	195	Right-handed 310
Helix 3	AA3	A	205	208	Right-handed 310
Helix 4	AA4	A	320	330	Right-handed alpha
Helix 5	AA5	A	406	408	Right-handed 310
Helix 6	AA6	A	444	453	Right-handed alpha
Helix 7	AA7	A	471	474	Right-handed 310
Helix 8	AA8	A	494	507	Right-handed alpha
Helix 9	AA9	A	526	531	Right-handed alpha
Helix 10	AB1	A	532	557	Right-handed alpha
Helix 11	AB2	A	560	562	Right-handed 310
Helix 12	AB3	A	611	621	Right-handed alpha
Helix 13	AB4	A	622	624	Right-handed 310
Helix 14	AB5	A	657	661	Right-handed 310
Helix 15	AB6	B	28	32	Right-handed 310
Helix 16	AB7	B	87	91	Right-handed 310
Helix 17	AB8	B	100	104	Right-handed 310
Helix 18	AB9	B	164	166	Right-handed 310
Helix 19	AC1	B	195	197	Right-handed 310
Helix 20	AC2	B	209	212	Right-handed 310
Helix 21	AC3	C	79	83	Right-handed 310
Helix 22	AC4	C	122	127	Right-handed alpha
Helix 23	AC5	C	184	189	Right-handed alpha
Helix 24	AC6	D	175	180	Right-handed 310
Helix 25	AC7	D	192	195	Right-handed 310
Helix 26	AC8	D	205	208	Right-handed 310
Helix 27	AC9	D	320	330	Right-handed alpha
Helix 28	AD1	D	406	408	Right-handed 310
Helix 29	AD2	D	444	453	Right-handed alpha
Helix 30	AD3	D	471	474	Right-handed 310
Helix 31	AD4	D	494	507	Right-handed alpha
Helix 32	AD5	D	526	531	Right-handed alpha
Helix 33	AD6	D	532	557	Right-handed alpha
Helix 34	AD7	D	560	562	Right-handed 310
Helix 35	AD8	D	611	621	Right-handed alpha
Helix 36	AD9	D	622	624	Right-handed 310
Helix 37	AE1	D	657	661	Right-handed 310
Helix 38	AE2	E	28	32	Right-handed 310
Helix 39	AE3	E	87	91	Right-handed 310
Helix 40	AE4	E	100	104	Right-handed 310
Helix 41	AE5	E	164	166	Right-handed 310
Helix 42	AE6	E	195	197	Right-handed 310
Helix 43	AE7	E	209	212	Right-handed 310
Helix 44	AE8	F	79	83	Right-handed 310
Helix 45	AE9	F	122	127	Right-handed alpha
Helix 46	AF1	F	184	189	Right-handed alpha

There are 44 sheets in PDB entry 8SMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	25	28	parallel
Strand 3	A	77	80	anti-parallel
Strand 4	A	48	51	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	117	parallel
Strand 3	A	90	95	anti-parallel
Strand 4	A	41	44	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	117	parallel
Strand 3	A	181	189	anti-parallel
Strand 4	A	243	253	anti-parallel
Strand 5	A	211	215	anti-parallel
Strand 6	A	227	229	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	282	293	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	197	203	anti-parallel
Strand 5	A	235	238	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	353	359	anti-parallel
Strand 3	A	362	368	anti-parallel
Strand 4	A	390	392	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	305	309	parallel
Strand 3	A	648	651	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	459	463	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	421	423	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	564	568	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	573	first strand
Strand 2	A	579	581	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	626	630	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	609	610	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	69	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	177	178	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	218	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	103	107	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	103	107	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	98	99	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	146	151	anti-parallel
Strand 3	C	192	198	anti-parallel
Strand 4	C	206	211	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	25	28	parallel
Strand 3	D	77	80	anti-parallel
Strand 4	D	48	51	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	20	first strand
Strand 2	D	106	117	parallel
Strand 3	D	90	95	anti-parallel
Strand 4	D	41	44	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	20	first strand
Strand 2	D	106	117	parallel
Strand 3	D	181	189	anti-parallel
Strand 4	D	243	253	anti-parallel
Strand 5	D	211	215	anti-parallel
Strand 6	D	227	229	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	150	first strand
Strand 2	D	282	293	parallel
Strand 3	D	264	273	anti-parallel
Strand 4	D	197	203	anti-parallel
Strand 5	D	235	238	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	353	359	anti-parallel
Strand 3	D	362	368	anti-parallel
Strand 4	D	390	392	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	305	309	parallel
Strand 3	D	648	651	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	428	432	anti-parallel
Strand 3	D	459	463	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	418	first strand
Strand 2	D	421	423	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	480	first strand
Strand 2	D	487	493	anti-parallel
Strand 3	D	564	568	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	571	573	first strand
Strand 2	D	579	581	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	592	first strand
Strand 2	D	595	599	anti-parallel
Strand 3	D	626	630	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	606	first strand
Strand 2	D	609	610	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	177	178	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	203	208	anti-parallel
Strand 3	E	213	218	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	103	107	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	48	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	103	107	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	98	99	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	160	164	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	155	first strand
Strand 2	F	146	151	anti-parallel
Strand 3	F	192	198	anti-parallel
Strand 4	F	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMK