Analysis of interatomic Contacts of Structural Units in PDB entry:
8SML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SML entry

There are 6 chains in PDB entry 8SML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	VAL 662
B	ASP 1	ILE 106
C	GLU 4	VAL 124
D	GLY 4	VAL 662
E	ASP 1	ILE 106
F	GLU 4	VAL 124

There are 36 helices in PDB entry 8SML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	164	168	Right-handed 310
Helix 2	AA2	A	173	179	Right-handed 310
Helix 3	AA3	A	205	208	Right-handed 310
Helix 4	AA4	A	317	330	Right-handed alpha
Helix 5	AA5	A	406	408	Right-handed 310
Helix 6	AA6	A	444	453	Right-handed alpha
Helix 7	AA7	A	454	458	Right-handed 310
Helix 8	AA8	A	471	474	Right-handed 310
Helix 9	AA9	A	494	507	Right-handed alpha
Helix 10	AB1	A	527	531	Right-handed alpha
Helix 11	AB2	A	532	558	Right-handed alpha
Helix 12	AB3	A	560	562	Right-handed 310
Helix 13	AB4	A	575	577	Right-handed 310
Helix 14	AB5	A	610	621	Right-handed alpha
Helix 15	AB6	A	622	624	Right-handed 310
Helix 16	AB7	A	657	661	Right-handed 310
Helix 17	AB8	C	64	67	Right-handed 310
Helix 18	AB9	C	89	93	Right-handed 310
Helix 19	AC1	D	164	168	Right-handed 310
Helix 20	AC2	D	173	179	Right-handed 310
Helix 21	AC3	D	205	208	Right-handed 310
Helix 22	AC4	D	317	330	Right-handed alpha
Helix 23	AC5	D	406	408	Right-handed 310
Helix 24	AC6	D	444	453	Right-handed alpha
Helix 25	AC7	D	454	458	Right-handed 310
Helix 26	AC8	D	471	474	Right-handed 310
Helix 27	AC9	D	494	507	Right-handed alpha
Helix 28	AD1	D	527	531	Right-handed alpha
Helix 29	AD2	D	532	558	Right-handed alpha
Helix 30	AD3	D	560	562	Right-handed 310
Helix 31	AD4	D	575	577	Right-handed 310
Helix 32	AD5	D	610	621	Right-handed alpha
Helix 33	AD6	D	622	624	Right-handed 310
Helix 34	AD7	D	657	661	Right-handed 310
Helix 35	AD8	F	64	67	Right-handed 310
Helix 36	AD9	F	89	93	Right-handed 310

There are 34 sheets in PDB entry 8SML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	25	28	parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	48	53	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	104	118	parallel
Strand 3	A	90	96	anti-parallel
Strand 4	A	40	44	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	104	118	parallel
Strand 3	A	181	188	anti-parallel
Strand 4	A	244	253	anti-parallel
Strand 5	A	211	216	anti-parallel
Strand 6	A	225	229	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	282	293	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	197	203	anti-parallel
Strand 5	A	235	238	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	353	357	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	390	393	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	305	310	parallel
Strand 3	A	647	651	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	460	463	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	421	423	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	564	568	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	573	first strand
Strand 2	A	579	581	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	626	630	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	102	105	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	44	50	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	102	105	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	120	123	parallel
Strand 3	C	94	102	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	120	123	parallel
Strand 3	C	94	102	anti-parallel
Strand 4	C	112	114	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	25	28	parallel
Strand 3	D	75	80	anti-parallel
Strand 4	D	48	53	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	20	first strand
Strand 2	D	104	118	parallel
Strand 3	D	90	96	anti-parallel
Strand 4	D	40	44	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	20	first strand
Strand 2	D	104	118	parallel
Strand 3	D	181	188	anti-parallel
Strand 4	D	244	253	anti-parallel
Strand 5	D	211	216	anti-parallel
Strand 6	D	225	229	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	150	first strand
Strand 2	D	282	293	parallel
Strand 3	D	264	273	anti-parallel
Strand 4	D	197	203	anti-parallel
Strand 5	D	235	238	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	353	357	anti-parallel
Strand 3	D	364	369	anti-parallel
Strand 4	D	390	393	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	336	first strand
Strand 2	D	305	310	parallel
Strand 3	D	647	651	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	428	432	anti-parallel
Strand 3	D	460	463	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	418	first strand
Strand 2	D	421	423	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	480	first strand
Strand 2	D	487	493	anti-parallel
Strand 3	D	564	568	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	571	573	first strand
Strand 2	D	579	581	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	592	first strand
Strand 2	D	595	599	anti-parallel
Strand 3	D	626	630	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	44	50	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	10	first strand
Strand 2	F	21	28	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	120	123	parallel
Strand 3	F	94	102	anti-parallel
Strand 4	F	36	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	120	123	parallel
Strand 3	F	94	102	anti-parallel
Strand 4	F	112	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SML

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SML