Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SMQ entry

There are 8 chains in PDB entry 8SMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 32	GLY 139
A	ILE 141	GLU 202
B	ASP 33	GLY 139
B	ILE 141	GLU 202
C	ASP 33	GLY 139
C	ILE 141	SER 201
D	ASP 33	GLY 139
D	ILE 141	GLU 202

There are 4 helices in PDB entry 8SMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	170	173	Right-handed 310
Helix 2	AA2	B	170	173	Right-handed 310
Helix 3	AA3	C	170	173	Right-handed 310
Helix 4	AA4	D	170	173	Right-handed 310

There are 16 sheets in PDB entry 8SMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	B	189	200	anti-parallel
Strand 3	A	58	63	anti-parallel
Strand 4	A	48	53	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	B	189	200	anti-parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	148	154	anti-parallel
Strand 5	A	122	126	anti-parallel
Strand 6	A	131	135	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	73	81	anti-parallel
Strand 3	B	175	183	anti-parallel
Strand 4	A	101	109	anti-parallel
Strand 5	A	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	73	81	anti-parallel
Strand 3	B	175	183	anti-parallel
Strand 4	A	101	109	anti-parallel
Strand 5	A	113	117	anti-parallel
Strand 6	A	158	160	anti-parallel
Strand 7	A	165	166	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	72	81	anti-parallel
Strand 3	A	175	183	anti-parallel
Strand 4	B	101	109	anti-parallel
Strand 5	B	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	72	81	anti-parallel
Strand 3	A	175	183	anti-parallel
Strand 4	B	101	109	anti-parallel
Strand 5	B	113	117	anti-parallel
Strand 6	B	158	160	anti-parallel
Strand 7	B	165	166	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	A	189	200	anti-parallel
Strand 3	B	57	63	anti-parallel
Strand 4	B	48	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	A	189	200	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	148	154	anti-parallel
Strand 5	B	122	126	anti-parallel
Strand 6	B	131	135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	D	189	200	anti-parallel
Strand 3	C	58	63	anti-parallel
Strand 4	C	48	53	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	D	189	200	anti-parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	148	154	anti-parallel
Strand 5	C	122	126	anti-parallel
Strand 6	C	131	135	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	73	81	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	C	101	109	anti-parallel
Strand 5	C	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	73	81	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	C	101	109	anti-parallel
Strand 5	C	113	117	anti-parallel
Strand 6	C	158	160	anti-parallel
Strand 7	C	165	166	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	72	81	anti-parallel
Strand 3	C	175	183	anti-parallel
Strand 4	D	101	109	anti-parallel
Strand 5	D	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	72	81	anti-parallel
Strand 3	C	175	183	anti-parallel
Strand 4	D	101	109	anti-parallel
Strand 5	D	114	117	anti-parallel
Strand 6	D	158	160	anti-parallel
Strand 7	D	165	166	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	C	189	199	anti-parallel
Strand 3	D	57	63	anti-parallel
Strand 4	D	48	54	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	C	189	199	anti-parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	148	154	anti-parallel
Strand 5	D	122	126	anti-parallel
Strand 6	D	131	135	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMQ