Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SMR entry

There are 13 chains in PDB entry 8SMR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 6	GLU 195
I	MET 1	GLY 403
J	GLN 26	LYS 257
K	ALA 21	HIS 201
L	ALA 24	GLY 39
Z	ASN 3	LYS 196
D	MET 1	GLY 403
M	PRO 25	LYS 257
N	ALA 21	HIS 201
O	ALA 24	GLY 39
E	PRO 8	ALA 475
F	MET 1	LYS 200
G	MET 1	HIS 312

There are136 helices in PDB entry 8SMR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	7	36	Right-handed alpha
Helix 2	AA2	C	40	47	Right-handed alpha
Helix 3	AA3	C	78	85	Right-handed alpha
Helix 4	AA4	C	86	92	Right-handed 310
Helix 5	AA5	I	2	12	Right-handed alpha
Helix 6	AA6	I	13	22	Right-handed alpha
Helix 7	AA7	I	32	35	Right-handed 310
Helix 8	AA8	I	36	57	Right-handed alpha
Helix 9	AA9	I	65	76	Right-handed alpha
Helix 10	AB1	I	79	108	Right-handed alpha
Helix 11	AB2	I	115	139	Right-handed alpha
Helix 12	AB3	I	142	156	Right-handed alpha
Helix 13	AB4	I	157	159	Right-handed 310
Helix 14	AB5	I	162	172	Right-handed alpha
Helix 15	AB6	I	177	190	Right-handed alpha
Helix 16	AB7	I	190	211	Right-handed alpha
Helix 17	AB8	I	219	223	Right-handed 310
Helix 18	AB9	I	236	262	Right-handed alpha
Helix 19	AC1	I	271	276	Right-handed 310
Helix 20	AC2	I	290	292	Right-handed 310
Helix 21	AC3	I	293	303	Right-handed alpha
Helix 22	AC4	I	305	327	Right-handed alpha
Helix 23	AC5	I	333	337	Right-handed 310
Helix 24	AC6	I	338	360	Right-handed alpha
Helix 25	AC7	I	364	384	Right-handed alpha
Helix 26	AC8	I	384	392	Right-handed alpha
Helix 27	AC9	J	36	51	Right-handed alpha
Helix 28	AD1	J	62	70	Right-handed alpha
Helix 29	AD2	J	72	80	Right-handed alpha
Helix 30	AD3	J	96	105	Right-handed alpha
Helix 31	AD4	J	113	119	Right-handed alpha
Helix 32	AD5	J	119	128	Right-handed alpha
Helix 33	AD6	J	154	159	Right-handed alpha
Helix 34	AD7	J	204	224	Right-handed alpha
Helix 35	AD8	J	226	254	Right-handed alpha
Helix 36	AD9	K	23	31	Right-handed alpha
Helix 37	AE1	K	34	39	Right-handed alpha
Helix 38	AE2	K	56	69	Right-handed alpha
Helix 39	AE3	K	74	78	Right-handed 310
Helix 40	AE4	K	85	98	Right-handed alpha
Helix 41	AE5	K	107	121	Right-handed alpha
Helix 42	AE6	K	153	166	Right-handed alpha
Helix 43	AE7	K	176	184	Right-handed alpha
Helix 44	AE8	K	186	199	Right-handed alpha
Helix 45	AE9	L	25	29	Right-handed alpha
Helix 46	AF1	Z	9	36	Right-handed alpha
Helix 47	AF2	Z	42	46	Right-handed 310
Helix 48	AF3	Z	78	85	Right-handed alpha
Helix 49	AF4	Z	86	92	Right-handed 310
Helix 50	AF5	D	2	12	Right-handed alpha
Helix 51	AF6	D	13	22	Right-handed alpha
Helix 52	AF7	D	32	35	Right-handed 310
Helix 53	AF8	D	36	57	Right-handed alpha
Helix 54	AF9	D	65	76	Right-handed alpha
Helix 55	AG1	D	79	109	Right-handed alpha
Helix 56	AG2	D	115	139	Right-handed alpha
Helix 57	AG3	D	142	156	Right-handed alpha
Helix 58	AG4	D	157	159	Right-handed 310
Helix 59	AG5	D	162	172	Right-handed alpha
Helix 60	AG6	D	177	190	Right-handed alpha
Helix 61	AG7	D	190	211	Right-handed alpha
Helix 62	AG8	D	219	223	Right-handed 310
Helix 63	AG9	D	236	262	Right-handed alpha
Helix 64	AH1	D	271	276	Right-handed 310
Helix 65	AH2	D	290	292	Right-handed 310
Helix 66	AH3	D	293	303	Right-handed alpha
Helix 67	AH4	D	305	322	Right-handed alpha
Helix 68	AH5	D	322	327	Right-handed alpha
Helix 69	AH6	D	333	337	Right-handed 310
Helix 70	AH7	D	338	359	Right-handed alpha
Helix 71	AH8	D	364	384	Right-handed alpha
Helix 72	AH9	D	384	392	Right-handed alpha
Helix 73	AI1	M	36	51	Right-handed alpha
Helix 74	AI2	M	62	70	Right-handed alpha
Helix 75	AI3	M	72	80	Right-handed alpha
Helix 76	AI4	M	96	105	Right-handed alpha
Helix 77	AI5	M	113	118	Right-handed alpha
Helix 78	AI6	M	119	128	Right-handed alpha
Helix 79	AI7	M	154	159	Right-handed alpha
Helix 80	AI8	M	204	224	Right-handed alpha
Helix 81	AI9	M	226	256	Right-handed alpha
Helix 82	AJ1	N	23	31	Right-handed alpha
Helix 83	AJ2	N	34	39	Right-handed alpha
Helix 84	AJ3	N	56	69	Right-handed alpha
Helix 85	AJ4	N	74	78	Right-handed 310
Helix 86	AJ5	N	85	98	Right-handed alpha
Helix 87	AJ6	N	107	121	Right-handed alpha
Helix 88	AJ7	N	153	166	Right-handed alpha
Helix 89	AJ8	N	176	183	Right-handed alpha
Helix 90	AJ9	N	186	199	Right-handed alpha
Helix 91	AK1	O	25	29	Right-handed alpha
Helix 92	AK2	E	11	42	Right-handed alpha
Helix 93	AK3	E	43	47	Right-handed 310
Helix 94	AK4	E	49	52	Right-handed 310
Helix 95	AK5	E	53	68	Right-handed alpha
Helix 96	AK6	E	68	87	Right-handed alpha
Helix 97	AK7	E	92	114	Right-handed alpha
Helix 98	AK8	E	133	152	Right-handed alpha
Helix 99	AK9	E	159	180	Right-handed alpha
Helix 100	AL1	E	195	211	Right-handed alpha
Helix 101	AL2	E	216	232	Right-handed alpha
Helix 102	AL3	E	237	253	Right-handed alpha
Helix 103	AL4	E	255	261	Right-handed 310
Helix 104	AL5	E	266	294	Right-handed alpha
Helix 105	AL6	E	298	304	Right-handed 310
Helix 106	AL7	E	305	329	Right-handed alpha
Helix 107	AL8	E	330	337	Right-handed alpha
Helix 108	AL9	E	340	352	Right-handed alpha
Helix 109	AM1	E	354	371	Right-handed alpha
Helix 110	AM2	E	378	413	Right-handed alpha
Helix 111	AM3	E	423	461	Right-handed alpha
Helix 112	AM4	E	464	473	Right-handed alpha
Helix 113	AM5	F	3	10	Right-handed alpha
Helix 114	AM6	F	10	30	Right-handed alpha
Helix 115	AM7	F	31	34	Right-handed 310
Helix 116	AM8	F	36	40	Right-handed 310
Helix 117	AM9	F	50	63	Right-handed alpha
Helix 118	AN1	F	64	68	Right-handed 310
Helix 119	AN2	F	76	84	Right-handed alpha
Helix 120	AN3	F	88	93	Right-handed 310
Helix 121	AN4	F	117	122	Right-handed alpha
Helix 122	AN5	F	127	132	Right-handed alpha
Helix 123	AN6	F	152	163	Right-handed alpha
Helix 124	AN7	F	168	179	Right-handed alpha
Helix 125	AN8	F	183	194	Right-handed alpha
Helix 126	AN9	G	2	28	Right-handed alpha
Helix 127	AO1	G	55	76	Right-handed alpha
Helix 128	AO2	G	103	127	Right-handed alpha
Helix 129	AO3	G	130	135	Right-handed alpha
Helix 130	AO4	G	137	152	Right-handed alpha
Helix 131	AO5	G	152	157	Right-handed alpha
Helix 132	AO6	G	179	190	Right-handed alpha
Helix 133	AO7	G	202	217	Right-handed alpha
Helix 134	AO8	G	230	241	Right-handed alpha
Helix 135	AO9	G	272	283	Right-handed alpha
Helix 136	AP1	G	291	312	Right-handed alpha

There are 19 sheets in PDB entry 8SMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	187	190	anti-parallel
Strand 3	C	180	184	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	67	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	117	121	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	149	151	anti-parallel
Strand 3	C	158	159	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	28	first strand
Strand 2	I	233	235	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	61	first strand
Strand 2	J	90	91	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	130	132	first strand
Strand 2	J	140	142	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	161	169	first strand
Strand 2	J	187	196	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	171	172	first strand
Strand 2	J	175	176	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	200	201	first strand
Strand 2	L	34	35	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	50	53	first strand
Strand 2	Z	187	190	anti-parallel
Strand 3	Z	180	184	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	61	67	first strand
Strand 2	Z	70	76	anti-parallel
Strand 3	Z	117	121	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	132	134	first strand
Strand 2	Z	149	151	anti-parallel
Strand 3	Z	158	160	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	233	235	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	61	first strand
Strand 2	M	90	91	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	130	132	first strand
Strand 2	M	140	142	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	161	162	first strand
Strand 2	M	195	196	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	200	201	first strand
Strand 2	O	34	35	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	186	first strand
Strand 2	E	189	192	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	192	first strand
Strand 2	G	287	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SMR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMR