Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SMS entry

There are 4 chains in PDB entry 8SMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 0LYS 405
B
 VAL 0LEU 404
C
 SER 1ALA 77
D
 SER 1GLN 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8SMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
36 42Right-handed alpha
Helix 3
AA3
A
61 66Right-handed alpha
Helix 4
AA4
A
69 87Right-handed alpha
Helix 5
AA5
A
89 94Right-handed alpha
Helix 6
AA6
A
109 121Right-handed alpha
Helix 7
AA7
A
125 130Right-handed alpha
Helix 8
AA8
A
132 138Right-handed alpha
Helix 9
AA9
A
140 148Right-handed alpha
Helix 10
AB1
A
161 163Right-handed 310
Helix 11
AB2
A
164 179Right-handed alpha
Helix 12
AB3
A
194 204Right-handed alpha
Helix 13
AB4
A
214 218Right-handed 310
Helix 14
AB5
A
243 249Right-handed alpha
Helix 15
AB6
A
274 286Right-handed alpha
Helix 16
AB7
A
302 318Right-handed alpha
Helix 17
AB8
A
327 332Right-handed alpha
Helix 18
AB9
A
334 336Right-handed 310
Helix 19
AC1
A
337 353Right-handed alpha
Helix 20
AC2
A
365 369Right-handed 310
Helix 21
AC3
B
18 29Right-handed alpha
Helix 22
AC4
B
36 43Right-handed alpha
Helix 23
AC5
B
61 66Right-handed alpha
Helix 24
AC6
B
69 86Right-handed alpha
Helix 25
AC7
B
89 94Right-handed alpha
Helix 26
AC8
B
109 121Right-handed alpha
Helix 27
AC9
B
125 130Right-handed alpha
Helix 28
AD1
B
132 138Right-handed alpha
Helix 29
AD2
B
140 148Right-handed alpha
Helix 30
AD3
B
161 163Right-handed 310
Helix 31
AD4
B
164 179Right-handed alpha
Helix 32
AD5
B
194 204Right-handed alpha
Helix 33
AD6
B
214 218Right-handed 310
Helix 34
AD7
B
243 249Right-handed alpha
Helix 35
AD8
B
274 286Right-handed alpha
Helix 36
AD9
B
302 317Right-handed alpha
Helix 37
AE1
B
327 332Right-handed alpha
Helix 38
AE2
B
334 336Right-handed 310
Helix 39
AE3
B
337 352Right-handed alpha
Helix 40
AE4
B
365 369Right-handed 310
Helix 41
AE5
C
5 17Right-handed alpha
Helix 42
AE6
C
35 51Right-handed alpha
Helix 43
AE7
C
55 60Right-handed alpha
Helix 44
AE8
C
64 74Right-handed alpha
Helix 45
AE9
D
2 16Right-handed alpha
Helix 46
AF1
D
35 51Right-handed alpha
Helix 47
AF2
D
55 62Right-handed alpha
Helix 48
AF3
D
64 74Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8SMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
323 325parallel
Strand 3
A
294 296parallel
Strand 4
A
384 391parallel
Strand 5
A
395 402anti-parallel
Strand 6
A
255 264anti-parallel
Strand 7
A
4 12anti-parallel
Strand 8
A
234 242anti-parallel
Strand 9
A
184 191anti-parallel
Strand 10
A
99 104parallel
Strand 11
A
156 160parallel
Strand 12
B
156 160anti-parallel
Strand 13
B
99 104parallel
Strand 14
B
184 191parallel
Strand 15
B
234 242anti-parallel
Strand 16
B
4 12anti-parallel
Strand 17
B
255 264anti-parallel
Strand 18
B
395 402anti-parallel
Strand 19
B
384 391anti-parallel
Strand 20
B
294 296parallel
Strand 21
B
323 325parallel
Strand 22
B
372 373parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
378 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 355first strand
Strand 2
B
378 379anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il