Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SMU entry

There are 7 chains in PDB entry 8SMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 231
A	VAL 235	THR 397
B	MET 1	LEU 231
B	VAL 235	ILE 396
C	SER 2	LEU 231
C	VAL 235	ILE 396
D	MET 1	GLY 144

There are 40 helices in PDB entry 8SMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed 310
Helix 2	AA2	A	54	62	Right-handed alpha
Helix 3	AA3	A	111	114	Right-handed 310
Helix 4	AA4	A	178	183	Right-handed alpha
Helix 5	AA5	A	184	186	Right-handed 310
Helix 6	AA6	A	223	228	Right-handed 310
Helix 7	AA7	A	235	239	Right-handed 310
Helix 8	AA8	A	242	248	Right-handed 310
Helix 9	AA9	A	249	254	Right-handed alpha
Helix 10	AB1	A	323	326	Right-handed 310
Helix 11	AB2	B	2	7	Right-handed alpha
Helix 12	AB3	B	54	62	Right-handed alpha
Helix 13	AB4	B	93	95	Right-handed 310
Helix 14	AB5	B	111	114	Right-handed 310
Helix 15	AB6	B	178	183	Right-handed alpha
Helix 16	AB7	B	184	186	Right-handed 310
Helix 17	AB8	B	223	228	Right-handed 310
Helix 18	AB9	B	235	239	Right-handed 310
Helix 19	AC1	B	242	248	Right-handed 310
Helix 20	AC2	B	249	254	Right-handed alpha
Helix 21	AC3	B	323	326	Right-handed 310
Helix 22	AC4	C	3	7	Right-handed alpha
Helix 23	AC5	C	54	63	Right-handed alpha
Helix 24	AC6	C	111	114	Right-handed 310
Helix 25	AC7	C	179	186	Right-handed 310
Helix 26	AC8	C	223	228	Right-handed 310
Helix 27	AC9	C	235	239	Right-handed 310
Helix 28	AD1	C	242	248	Right-handed 310
Helix 29	AD2	C	249	254	Right-handed alpha
Helix 30	AD3	C	323	326	Right-handed 310
Helix 31	AD4	D	4	9	Right-handed 310
Helix 32	AD5	D	54	62	Right-handed alpha
Helix 33	AD6	D	93	95	Right-handed 310
Helix 34	AD7	D	111	114	Right-handed 310
Helix 35	AD8	D	179	186	Right-handed 310
Helix 36	AD9	D	223	228	Right-handed 310
Helix 37	AE1	D	235	239	Right-handed 310
Helix 38	AE2	D	242	248	Right-handed 310
Helix 39	AE3	D	249	254	Right-handed alpha
Helix 40	AE4	D	323	326	Right-handed 310

There are 11 sheets in PDB entry 8SMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	22	first strand
Strand 2	A	25	36	anti-parallel
Strand 3	A	207	215	anti-parallel
Strand 4	A	384	394	anti-parallel
Strand 5	A	366	375	anti-parallel
Strand 6	A	315	322	anti-parallel
Strand 7	A	327	337	anti-parallel
Strand 8	A	343	354	anti-parallel
Strand 9	A	259	267	anti-parallel
Strand 10	A	272	282	anti-parallel
Strand 11	A	285	295	anti-parallel
Strand 12	A	12	22	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	73	first strand
Strand 2	A	105	110	anti-parallel
Strand 3	A	115	126	anti-parallel
Strand 4	A	130	140	anti-parallel
Strand 5	A	146	164	anti-parallel
Strand 6	A	168	177	anti-parallel
Strand 7	A	194	204	anti-parallel
Strand 8	A	44	51	anti-parallel
Strand 9	A	82	92	anti-parallel
Strand 10	A	97	103	anti-parallel
Strand 11	A	115	126	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	22	first strand
Strand 2	B	25	36	anti-parallel
Strand 3	B	207	215	anti-parallel
Strand 4	B	384	394	anti-parallel
Strand 5	B	366	375	anti-parallel
Strand 6	B	315	322	anti-parallel
Strand 7	B	327	337	anti-parallel
Strand 8	B	343	354	anti-parallel
Strand 9	B	259	267	anti-parallel
Strand 10	B	272	282	anti-parallel
Strand 11	B	285	295	anti-parallel
Strand 12	B	12	22	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	115	127	anti-parallel
Strand 4	B	130	140	anti-parallel
Strand 5	B	146	165	anti-parallel
Strand 6	B	168	177	anti-parallel
Strand 7	B	194	204	anti-parallel
Strand 8	B	44	51	anti-parallel
Strand 9	B	81	86	anti-parallel
Strand 10	B	76	78	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	115	127	anti-parallel
Strand 4	B	97	101	anti-parallel
Strand 5	B	88	92	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	22	first strand
Strand 2	C	25	36	anti-parallel
Strand 3	C	207	215	anti-parallel
Strand 4	C	384	394	anti-parallel
Strand 5	C	366	375	anti-parallel
Strand 6	C	315	322	anti-parallel
Strand 7	C	327	337	anti-parallel
Strand 8	C	343	354	anti-parallel
Strand 9	C	259	267	anti-parallel
Strand 10	C	272	282	anti-parallel
Strand 11	C	285	295	anti-parallel
Strand 12	C	12	22	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	73	first strand
Strand 2	C	105	110	anti-parallel
Strand 3	C	115	126	anti-parallel
Strand 4	C	97	103	anti-parallel
Strand 5	C	81	92	anti-parallel
Strand 6	C	76	78	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	73	first strand
Strand 2	C	105	110	anti-parallel
Strand 3	C	115	126	anti-parallel
Strand 4	C	130	140	anti-parallel
Strand 5	C	146	164	anti-parallel
Strand 6	C	168	177	anti-parallel
Strand 7	C	194	204	anti-parallel
Strand 8	C	44	51	anti-parallel
Strand 9	C	81	92	anti-parallel
Strand 10	C	76	78	anti-parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	22	first strand
Strand 2	D	25	36	anti-parallel
Strand 3	D	207	215	anti-parallel
Strand 4	D	384	394	anti-parallel
Strand 5	D	366	375	anti-parallel
Strand 6	D	315	322	anti-parallel
Strand 7	D	327	337	anti-parallel
Strand 8	D	343	354	anti-parallel
Strand 9	D	259	267	anti-parallel
Strand 10	D	272	282	anti-parallel
Strand 11	D	285	295	anti-parallel
Strand 12	D	12	22	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	73	first strand
Strand 2	D	105	110	anti-parallel
Strand 3	D	115	127	anti-parallel
Strand 4	D	97	103	anti-parallel
Strand 5	D	82	92	anti-parallel
Strand 6	D	76	77	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	73	first strand
Strand 2	D	105	110	anti-parallel
Strand 3	D	115	127	anti-parallel
Strand 4	D	130	140	anti-parallel
Strand 5	D	146	164	anti-parallel
Strand 6	D	168	177	anti-parallel
Strand 7	D	194	204	anti-parallel
Strand 8	D	44	51	anti-parallel
Strand 9	D	82	92	anti-parallel
Strand 10	D	76	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SMU