Analysis of interatomic Contacts of Structural Units in PDB entry:
8SNG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SNG entry

There are 2 chains in PDB entry 8SNG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 377
B
 ASP 3SER 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8SNG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
32 47Right-handed alpha
Helix 3
AA3
A
56 68Right-handed alpha
Helix 4
AA4
A
83 93Right-handed alpha
Helix 5
AA5
A
110 118Right-handed alpha
Helix 6
AA6
A
136 148Right-handed alpha
Helix 7
AA7
A
196 207Right-handed alpha
Helix 8
AA8
A
239 271Right-handed alpha
Helix 9
AA9
A
298 303Right-handed alpha
Helix 10
AB1
A
305 316Right-handed alpha
Helix 11
AB2
A
326 329Right-handed 310
Helix 12
AB3
A
330 337Right-handed alpha
Helix 13
AB4
A
342 350Right-handed alpha
Helix 14
AB5
A
362 377Right-handed alpha
Helix 15
AB6
B
13 27Right-handed alpha
Helix 16
AB7
B
32 47Right-handed alpha
Helix 17
AB8
B
56 68Right-handed alpha
Helix 18
AB9
B
83 93Right-handed alpha
Helix 19
AC1
B
110 118Right-handed alpha
Helix 20
AC2
B
136 148Right-handed alpha
Helix 21
AC3
B
196 207Right-handed alpha
Helix 22
AC4
B
239 271Right-handed alpha
Helix 23
AC5
B
298 303Right-handed alpha
Helix 24
AC6
B
305 316Right-handed alpha
Helix 25
AC7
B
326 329Right-handed 310
Helix 26
AC8
B
330 337Right-handed alpha
Helix 27
AC9
B
342 350Right-handed alpha
Helix 28
AD1
B
362 377Right-handed alpha
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There are 10 sheets in PDB entry 8SNG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
190 194anti-parallel
Strand 3
A
173 177anti-parallel
Strand 4
A
152 154parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
75 79parallel
Strand 3
A
122 125parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
162 163anti-parallel
Strand 3
A
286 287anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
228 229anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
293 296anti-parallel
Strand 3
A
352 355anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
190 194anti-parallel
Strand 3
B
173 177anti-parallel
Strand 4
B
152 154parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
75 79parallel
Strand 3
B
122 125parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
162 163anti-parallel
Strand 3
B
286 287anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
228 229anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
293 296anti-parallel
Strand 3
B
352 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il