Analysis of interatomic Contacts of Structural Units in PDB entry:
8SNM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SNM entry

There are 3 chains in PDB entry 8SNM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 337	HIS 827
A	PRO 28	ARG 202
B	PRO 220	LEU 698

There are 39 helices in PDB entry 8SNM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	343	349	Right-handed alpha
Helix 2	AA2	C	361	367	Right-handed alpha
Helix 3	AA3	C	373	395	Right-handed alpha
Helix 4	AA4	C	433	441	Right-handed alpha
Helix 5	AA5	C	444	449	Right-handed alpha
Helix 6	AA6	C	451	467	Right-handed alpha
Helix 7	AA7	C	533	537	Right-handed 310
Helix 8	AA8	C	541	545	Right-handed 310
Helix 9	AA9	C	559	564	Right-handed alpha
Helix 10	AB1	C	583	590	Right-handed alpha
Helix 11	AB2	C	600	604	Right-handed 310
Helix 12	AB3	C	605	612	Right-handed alpha
Helix 13	AB4	C	626	631	Right-handed alpha
Helix 14	AB5	C	637	660	Right-handed alpha
Helix 15	AB6	C	660	683	Right-handed alpha
Helix 16	AB7	C	691	709	Right-handed alpha
Helix 17	AB8	C	715	735	Right-handed alpha
Helix 18	AB9	C	740	756	Right-handed alpha
Helix 19	AC1	C	768	795	Right-handed alpha
Helix 20	AC2	C	801	803	Right-handed 310
Helix 21	AC3	C	804	809	Right-handed alpha
Helix 22	AC4	C	815	820	Right-handed alpha
Helix 23	AC5	A	32	39	Right-handed alpha
Helix 24	AC6	A	46	48	Right-handed 310
Helix 25	AC7	A	86	90	Right-handed 310
Helix 26	AC8	A	110	112	Right-handed 310
Helix 27	AC9	A	153	156	Right-handed 310
Helix 28	AD1	A	170	172	Right-handed 310
Helix 29	AD2	A	190	194	Right-handed 310
Helix 30	AD3	B	232	239	Right-handed alpha
Helix 31	AD4	B	243	265	Right-handed alpha
Helix 32	AD5	B	313	325	Right-handed alpha
Helix 33	AD6	B	343	347	Right-handed 310
Helix 34	AD7	B	395	410	Right-handed alpha
Helix 35	AD8	B	451	465	Right-handed alpha
Helix 36	AD9	B	580	585	Right-handed alpha
Helix 37	AE1	B	647	658	Right-handed alpha
Helix 38	AE2	B	660	671	Right-handed alpha
Helix 39	AE3	B	671	698	Right-handed alpha

There are 11 sheets in PDB entry 8SNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	411	first strand
Strand 2	C	417	425	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	482	first strand
Strand 2	C	469	473	anti-parallel
Strand 3	C	492	495	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	582	first strand
Strand 2	C	569	572	anti-parallel
Strand 3	C	593	594	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	146	151	anti-parallel
Strand 4	A	137	141	anti-parallel
Strand 5	A	122	130	anti-parallel
Strand 6	A	114	119	anti-parallel
Strand 7	A	78	85	anti-parallel
Strand 8	A	66	73	anti-parallel
Strand 9	A	50	53	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	96	99	anti-parallel
Strand 3	B	276	285	parallel
Strand 4	B	224	231	parallel
Strand 5	B	334	339	parallel
Strand 6	B	382	386	parallel
Strand 7	B	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	371	first strand
Strand 2	B	376	379	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	392	393	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	523	first strand
Strand 2	B	526	527	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	546	547	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	590	first strand
Strand 2	B	603	605	anti-parallel
Strand 3	B	611	613	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	635	first strand
Strand 2	B	641	643	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SNM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SNM