Analysis of interatomic Contacts of Structural Units in PDB entry:
8SNN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SNN entry

There are 2 chains in PDB entry 8SNN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 477GLU 703
B
 LYS 337HIS 827
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8SNN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
580 585Right-handed alpha
Helix 2
AA2
A
595 599Right-handed 310
Helix 3
AA3
A
647 658Right-handed alpha
Helix 4
AA4
A
660 671Right-handed alpha
Helix 5
AA5
A
671 703Right-handed alpha
Helix 6
AA6
B
343 349Right-handed alpha
Helix 7
AA7
B
358 367Right-handed alpha
Helix 8
AA8
B
373 394Right-handed alpha
Helix 9
AA9
B
433 441Right-handed alpha
Helix 10
AB1
B
444 449Right-handed alpha
Helix 11
AB2
B
451 467Right-handed alpha
Helix 12
AB3
B
583 590Right-handed alpha
Helix 13
AB4
B
600 604Right-handed 310
Helix 14
AB5
B
605 612Right-handed alpha
Helix 15
AB6
B
626 631Right-handed alpha
Helix 16
AB7
B
632 634Right-handed 310
Helix 17
AB8
B
637 660Right-handed alpha
Helix 18
AB9
B
660 683Right-handed alpha
Helix 19
AC1
B
691 709Right-handed alpha
Helix 20
AC2
B
710 713Right-handed 310
Helix 21
AC3
B
715 735Right-handed alpha
Helix 22
AC4
B
740 759Right-handed alpha
Helix 23
AC5
B
765 796Right-handed alpha
Helix 24
AC6
B
802 809Right-handed alpha
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There are 7 sheets in PDB entry 8SNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 535first strand
Strand 2
A
546 547anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 574first strand
Strand 2
A
577 579anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 591first strand
Strand 2
A
603 605anti-parallel
Strand 3
A
611 613anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 634first strand
Strand 2
A
642 643anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 411first strand
Strand 2
B
417 425anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 482first strand
Strand 2
B
469 473anti-parallel
Strand 3
B
492 495anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 582first strand
Strand 2
B
569 572anti-parallel
Strand 3
B
593 594anti-parallel
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