Analysis of interatomic Contacts of Structural Units in PDB entry:
8SO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SO0 entry

There are 4 chains in PDB entry 8SO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ALA 589
B
 ASN 8VAL 446
C
 ASP 2PHE 308
D
 HIS 81MET 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8SO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 20Right-handed alpha
Helix 2
AA2
A
24 34Right-handed alpha
Helix 3
AA3
A
34 43Right-handed alpha
Helix 4
AA4
A
43 50Right-handed alpha
Helix 5
AA5
A
50 57Right-handed alpha
Helix 6
AA6
A
62 74Right-handed alpha
Helix 7
AA7
A
82 88Right-handed 310
Helix 8
AA8
A
89 97Right-handed alpha
Helix 9
AA9
A
101 117Right-handed alpha
Helix 10
AB1
A
120 127Right-handed alpha
Helix 11
AB2
A
127 137Right-handed alpha
Helix 12
AB3
A
140 148Right-handed alpha
Helix 13
AB4
A
150 155Right-handed alpha
Helix 14
AB5
A
159 175Right-handed alpha
Helix 15
AB6
A
178 196Right-handed alpha
Helix 16
AB7
A
197 204Right-handed alpha
Helix 17
AB8
A
204 214Right-handed alpha
Helix 18
AB9
A
217 235Right-handed alpha
Helix 19
AC1
A
236 244Right-handed alpha
Helix 20
AC2
A
244 253Right-handed alpha
Helix 21
AC3
A
256 266Right-handed alpha
Helix 22
AC4
A
266 275Right-handed alpha
Helix 23
AC5
A
275 282Right-handed alpha
Helix 24
AC6
A
282 292Right-handed alpha
Helix 25
AC7
A
295 305Right-handed alpha
Helix 26
AC8
A
305 313Right-handed alpha
Helix 27
AC9
A
317 325Right-handed alpha
Helix 28
AD1
A
325 335Right-handed alpha
Helix 29
AD2
A
338 350Right-handed alpha
Helix 30
AD3
A
352 364Right-handed alpha
Helix 31
AD4
A
364 374Right-handed alpha
Helix 32
AD5
A
377 387Right-handed alpha
Helix 33
AD6
A
388 396Right-handed alpha
Helix 34
AD7
A
396 413Right-handed alpha
Helix 35
AD8
A
416 435Right-handed alpha
Helix 36
AD9
A
435 442Right-handed alpha
Helix 37
AE1
A
443 452Right-handed alpha
Helix 38
AE2
A
455 482Right-handed alpha
Helix 39
AE3
A
482 487Right-handed alpha
Helix 40
AE4
A
488 492Right-handed 310
Helix 41
AE5
A
494 520Right-handed alpha
Helix 42
AE6
A
521 529Right-handed alpha
Helix 43
AE7
A
533 548Right-handed alpha
Helix 44
AE8
A
552 559Right-handed alpha
Helix 45
AE9
A
559 569Right-handed alpha
Helix 46
AF1
A
572 587Right-handed alpha
Helix 47
AF2
B
26 29Right-handed 310
Helix 48
AF3
B
145 149Right-handed 310
Helix 49
AF4
B
221 225Right-handed 310
Helix 50
AF5
B
281 286Right-handed alpha
Helix 51
AF6
B
326 331Right-handed 310
Helix 52
AF7
B
332 339Right-handed alpha
Helix 53
AF8
B
340 344Right-handed 310
Helix 54
AF9
B
382 386Right-handed 310
Helix 55
AG1
B
411 413Right-handed 310
Helix 56
AG2
C
3 19Right-handed alpha
Helix 57
AG3
C
24 40Right-handed alpha
Helix 58
AG4
C
61 73Right-handed alpha
Helix 59
AG5
C
92 107Right-handed alpha
Helix 60
AG6
C
120 127Right-handed alpha
Helix 61
AG7
C
128 138Right-handed alpha
Helix 62
AG8
C
140 151Right-handed alpha
Helix 63
AG9
C
176 182Right-handed alpha
Helix 64
AH1
C
193 201Right-handed alpha
Helix 65
AH2
C
221 233Right-handed alpha
Helix 66
AH3
C
264 268Right-handed 310
Helix 67
AH4
D
83 94Right-handed alpha
Helix 68
AH5
D
97 111Right-handed alpha
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There are 12 sheets in PDB entry 8SO0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 391first strand
Strand 2
B
12 19anti-parallel
Strand 3
B
438 444anti-parallel
Strand 4
B
430 434anti-parallel
Strand 5
B
421 424anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
51 57anti-parallel
Strand 4
B
71 78anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
90 92anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
109 114anti-parallel
Strand 3
B
119 132anti-parallel
Strand 4
B
156 172anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
191 195anti-parallel
Strand 3
B
199 204anti-parallel
Strand 4
B
207 216anti-parallel
Strand 5
C
300 301parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
241 246anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
267 269anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 293first strand
Strand 2
B
299 303anti-parallel
Strand 3
B
307 312anti-parallel
Strand 4
B
321 324anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
356 360anti-parallel
Strand 3
B
365 370anti-parallel
Strand 4
B
375 380anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 398first strand
Strand 2
B
408 409parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 251anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
80 82parallel
Strand 3
C
52 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
218 220parallel
Strand 3
C
209 211anti-parallel
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