Analysis of interatomic Contacts of Structural Units in PDB entry:
8SO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SO5 entry

There are 4 chains in PDB entry 8SO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	SER 11	GLN 179
I	SER 1	LEU 574
J	SER 11	GLN 179
L	SER 1	GLU 575

There are 60 helices in PDB entry 8SO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	21	23	Right-handed 310
Helix 2	AA2	G	31	60	Right-handed alpha
Helix 3	AA3	G	61	67	Right-handed alpha
Helix 4	AA4	G	82	94	Right-handed alpha
Helix 5	AA5	G	95	105	Right-handed alpha
Helix 6	AA6	G	107	131	Right-handed alpha
Helix 7	AA7	G	148	161	Right-handed alpha
Helix 8	AA8	G	162	167	Right-handed 310
Helix 9	AA9	G	168	174	Right-handed alpha
Helix 10	AB1	I	7	12	Right-handed alpha
Helix 11	AB2	I	138	142	Right-handed 310
Helix 12	AB3	I	155	158	Right-handed 310
Helix 13	AB4	I	160	171	Right-handed alpha
Helix 14	AB5	I	173	185	Right-handed alpha
Helix 15	AB6	I	214	221	Right-handed alpha
Helix 16	AB7	I	223	229	Right-handed alpha
Helix 17	AB8	I	243	247	Right-handed 310
Helix 18	AB9	I	280	284	Right-handed 310
Helix 19	AC1	I	294	298	Right-handed 310
Helix 20	AC2	I	306	321	Right-handed alpha
Helix 21	AC3	I	332	340	Right-handed alpha
Helix 22	AC4	I	345	360	Right-handed alpha
Helix 23	AC5	I	374	384	Right-handed alpha
Helix 24	AC6	I	394	403	Right-handed alpha
Helix 25	AC7	I	431	448	Right-handed alpha
Helix 26	AC8	I	456	460	Right-handed alpha
Helix 27	AC9	I	476	480	Right-handed 310
Helix 28	AD1	I	539	548	Right-handed alpha
Helix 29	AD2	I	556	563	Right-handed alpha
Helix 30	AD3	J	21	23	Right-handed 310
Helix 31	AD4	J	31	60	Right-handed alpha
Helix 32	AD5	J	61	67	Right-handed alpha
Helix 33	AD6	J	82	94	Right-handed alpha
Helix 34	AD7	J	95	105	Right-handed alpha
Helix 35	AD8	J	107	131	Right-handed alpha
Helix 36	AD9	J	148	161	Right-handed alpha
Helix 37	AE1	J	162	167	Right-handed 310
Helix 38	AE2	J	168	174	Right-handed alpha
Helix 39	AE3	L	7	12	Right-handed alpha
Helix 40	AE4	L	138	142	Right-handed 310
Helix 41	AE5	L	155	158	Right-handed 310
Helix 42	AE6	L	160	171	Right-handed alpha
Helix 43	AE7	L	173	185	Right-handed alpha
Helix 44	AE8	L	214	221	Right-handed alpha
Helix 45	AE9	L	225	229	Right-handed 310
Helix 46	AF1	L	243	247	Right-handed 310
Helix 47	AF2	L	261	265	Right-handed 310
Helix 48	AF3	L	280	284	Right-handed 310
Helix 49	AF4	L	294	298	Right-handed 310
Helix 50	AF5	L	306	321	Right-handed alpha
Helix 51	AF6	L	332	340	Right-handed alpha
Helix 52	AF7	L	345	360	Right-handed alpha
Helix 53	AF8	L	374	384	Right-handed alpha
Helix 54	AF9	L	394	403	Right-handed alpha
Helix 55	AG1	L	431	450	Right-handed alpha
Helix 56	AG2	L	456	460	Right-handed alpha
Helix 57	AG3	L	476	480	Right-handed 310
Helix 58	AG4	L	490	494	Right-handed 310
Helix 59	AG5	L	539	547	Right-handed alpha
Helix 60	AG6	L	556	563	Right-handed alpha

There are 18 sheets in PDB entry 8SO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	267	270	first strand
Strand 2	I	202	205	anti-parallel
Strand 3	I	190	196	anti-parallel
Strand 4	I	64	70	anti-parallel
Strand 5	I	58	60	anti-parallel
Strand 6	I	43	50	anti-parallel
Strand 7	I	32	39	anti-parallel
Strand 8	G	25	29	parallel
Strand 9	G	13	19	anti-parallel
Strand 10	I	567	573	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	276	first strand
Strand 2	I	2	6	anti-parallel
Strand 3	I	17	21	anti-parallel
Strand 4	I	508	513	anti-parallel
Strand 5	I	520	525	anti-parallel
Strand 6	I	551	552	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	24	first strand
Strand 2	I	505	506	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	99	first strand
Strand 2	I	87	93	anti-parallel
Strand 3	I	76	84	anti-parallel
Strand 4	I	147	153	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	99	first strand
Strand 2	I	87	93	anti-parallel
Strand 3	I	76	84	anti-parallel
Strand 4	I	238	240	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	110	first strand
Strand 2	I	116	125	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	364	367	first strand
Strand 2	I	370	373	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	411	413	first strand
Strand 2	I	425	427	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	468	471	first strand
Strand 2	I	461	465	anti-parallel
Strand 3	I	496	497	parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	267	270	first strand
Strand 2	L	202	205	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	64	70	anti-parallel
Strand 5	L	58	60	anti-parallel
Strand 6	L	43	50	anti-parallel
Strand 7	L	32	39	anti-parallel
Strand 8	J	25	29	parallel
Strand 9	J	12	19	anti-parallel
Strand 10	L	567	574	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	273	276	first strand
Strand 2	L	2	6	anti-parallel
Strand 3	L	17	21	anti-parallel
Strand 4	L	508	513	anti-parallel
Strand 5	L	520	525	anti-parallel
Strand 6	L	551	552	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	24	first strand
Strand 2	L	505	506	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	99	first strand
Strand 2	L	87	93	anti-parallel
Strand 3	L	76	84	anti-parallel
Strand 4	L	147	153	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	99	first strand
Strand 2	L	87	93	anti-parallel
Strand 3	L	76	84	anti-parallel
Strand 4	L	238	240	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	101	110	first strand
Strand 2	L	116	125	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	364	367	first strand
Strand 2	L	370	373	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	411	413	first strand
Strand 2	L	425	427	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	468	471	first strand
Strand 2	L	461	465	anti-parallel
Strand 3	L	496	497	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SO5