Analysis of interatomic Contacts of Structural Units in PDB entry:
8SO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SO8 entry

There is 1 chain in PDB entry 8SO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 110GLN 968
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8SO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 117Right-handed alpha
Helix 2
AA2
A
124 141Right-handed alpha
Helix 3
AA3
A
155 167Right-handed alpha
Helix 4
AA4
A
182 197Right-handed alpha
Helix 5
AA5
A
208 210Right-handed 310
Helix 6
AA6
A
211 222Right-handed alpha
Helix 7
AA7
A
231 242Right-handed alpha
Helix 8
AA8
A
244 248Right-handed 310
Helix 9
AA9
A
255 260Right-handed alpha
Helix 10
AB1
A
262 272Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
A
293 304Right-handed alpha
Helix 13
AB4
A
320 323Right-handed 310
Helix 14
AB5
A
324 332Right-handed alpha
Helix 15
AB6
A
338 361Right-handed alpha
Helix 16
AB7
A
366 377Right-handed alpha
Helix 17
AB8
A
381 392Right-handed alpha
Helix 18
AB9
A
395 409Right-handed alpha
Helix 19
AC1
A
441 455Right-handed alpha
Helix 20
AC2
A
459 468Right-handed alpha
Helix 21
AC3
A
469 472Right-handed 310
Helix 22
AC4
A
473 478Right-handed alpha
Helix 23
AC5
A
483 487Right-handed 310
Helix 24
AC6
A
488 501Right-handed alpha
Helix 25
AC7
A
512 528Right-handed alpha
Helix 26
AC8
A
539 552Right-handed alpha
Helix 27
AC9
A
586 596Right-handed alpha
Helix 28
AD1
A
616 627Right-handed alpha
Helix 29
AD2
A
638 656Right-handed alpha
Helix 30
AD3
A
662 683Right-handed alpha
Helix 31
AD4
A
686 695Right-handed alpha
Helix 32
AD5
A
695 710Right-handed alpha
Helix 33
AD6
A
712 727Right-handed alpha
Helix 34
AD7
A
764 771Right-handed alpha
Helix 35
AD8
A
781 794Right-handed alpha
Helix 36
AD9
A
827 835Right-handed 310
Helix 37
AE1
A
857 864Right-handed alpha
Helix 38
AE2
A
869 879Right-handed alpha
Helix 39
AE3
A
880 926Right-handed alpha
Helix 40
AE4
A
932 952Right-handed alpha
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There are 4 sheets in PDB entry 8SO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
251 254parallel
Strand 3
A
203 206parallel
Strand 4
A
276 279parallel
Strand 5
A
308 312parallel
Strand 6
A
172 175parallel
Strand 7
A
417 418parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 438first strand
Strand 2
A
606 613parallel
Strand 3
A
577 580parallel
Strand 4
A
506 509parallel
Strand 5
A
559 562parallel
Strand 6
A
531 533parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 732first strand
Strand 2
A
738 741anti-parallel
Strand 3
A
759 762anti-parallel
Strand 4
A
775 776parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 845first strand
Strand 2
A
814 823anti-parallel
Strand 3
A
954 966anti-parallel
Strand 4
A
799 805parallel
Strand 5
A
865 866anti-parallel
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