Analysis of interatomic Contacts of Structural Units in PDB entry:
8SO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SO9 entry

There are 2 chains in PDB entry 8SO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 37LEU 1092
B
 THR 7SER 873
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8SO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 82Right-handed alpha
Helix 2
AA2
A
85 91Right-handed alpha
Helix 3
AA3
A
92 94Right-handed 310
Helix 4
AA4
A
115 118Right-handed 310
Helix 5
AA5
A
119 129Right-handed alpha
Helix 6
AA6
A
144 159Right-handed alpha
Helix 7
AA7
A
171 180Right-handed alpha
Helix 8
AA8
A
180 190Right-handed alpha
Helix 9
AA9
A
192 199Right-handed alpha
Helix 10
AB1
A
208 213Right-handed alpha
Helix 11
AB2
A
240 253Right-handed alpha
Helix 12
AB3
A
255 260Right-handed alpha
Helix 13
AB4
A
286 289Right-handed 310
Helix 14
AB5
A
290 299Right-handed alpha
Helix 15
AB6
A
312 317Right-handed 310
Helix 16
AB7
A
335 340Right-handed alpha
Helix 17
AB8
A
345 349Right-handed 310
Helix 18
AB9
A
355 357Right-handed 310
Helix 19
AC1
A
421 423Right-handed 310
Helix 20
AC2
A
498 502Right-handed 310
Helix 21
AC3
A
548 560Right-handed alpha
Helix 22
AC4
A
568 578Right-handed alpha
Helix 23
AC5
A
581 587Right-handed 310
Helix 24
AC6
A
588 593Right-handed alpha
Helix 25
AC7
A
600 612Right-handed alpha
Helix 26
AC8
A
614 620Right-handed alpha
Helix 27
AC9
A
623 628Right-handed alpha
Helix 28
AD1
A
637 649Right-handed alpha
Helix 29
AD2
A
659 666Right-handed alpha
Helix 30
AD3
A
667 670Right-handed 310
Helix 31
AD4
A
675 686Right-handed alpha
Helix 32
AD5
A
690 706Right-handed alpha
Helix 33
AD6
A
709 722Right-handed alpha
Helix 34
AD7
A
726 752Right-handed alpha
Helix 35
AD8
A
761 775Right-handed alpha
Helix 36
AD9
A
838 858Right-handed alpha
Helix 37
AE1
A
888 894Right-handed alpha
Helix 38
AE2
A
905 915Right-handed alpha
Helix 39
AE3
A
917 943Right-handed alpha
Helix 40
AE4
A
948 950Right-handed 310
Helix 41
AE5
A
988 996Right-handed alpha
Helix 42
AE6
A
1003 1022Right-handed alpha
Helix 43
AE7
A
1023 1037Right-handed alpha
Helix 44
AE8
A
1044 1055Right-handed alpha
Helix 45
AE9
A
1060 1079Right-handed alpha
Helix 46
AF1
A
1080 1092Right-handed alpha
Helix 47
AF2
B
8 21Right-handed alpha
Helix 48
AF3
B
38 48Right-handed alpha
Helix 49
AF4
B
49 52Right-handed 310
Helix 50
AF5
B
53 73Right-handed alpha
Helix 51
AF6
B
74 76Right-handed 310
Helix 52
AF7
B
77 90Right-handed alpha
Helix 53
AF8
B
100 111Right-handed alpha
Helix 54
AF9
B
112 115Right-handed 310
Helix 55
AG1
B
118 136Right-handed alpha
Helix 56
AG2
B
138 150Right-handed alpha
Helix 57
AG3
B
172 184Right-handed alpha
Helix 58
AG4
B
188 206Right-handed alpha
Helix 59
AG5
B
207 209Right-handed 310
Helix 60
AG6
B
210 220Right-handed alpha
Helix 61
AG7
B
222 242Right-handed alpha
Helix 62
AG8
B
245 265Right-handed alpha
Helix 63
AG9
B
266 270Right-handed 310
Helix 64
AH1
B
299 310Right-handed alpha
Helix 65
AH2
B
522 543Right-handed alpha
Helix 66
AH3
B
605 613Right-handed alpha
Helix 67
AH4
B
613 620Right-handed alpha
Helix 68
AH5
B
621 623Right-handed 310
Helix 69
AH6
B
650 663Right-handed alpha
Helix 70
AH7
B
696 702Right-handed alpha
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There are 13 sheets in PDB entry 8SO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
133 139parallel
Strand 4
A
96 101anti-parallel
Strand 5
A
106 108anti-parallel
Strand 6
A
325 326parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 236first strand
Strand 2
A
219 226anti-parallel
Strand 3
A
303 308parallel
Strand 4
A
271 274anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
527 528parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 419first strand
Strand 2
A
360 369anti-parallel
Strand 3
A
515 520anti-parallel
Strand 4
A
478 483anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
379 386anti-parallel
Strand 3
A
402 403anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
379 386anti-parallel
Strand 3
A
428 437anti-parallel
Strand 4
A
458 467anti-parallel
Strand 5
A
485 486anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 784first strand
Strand 2
A
792 796anti-parallel
Strand 3
A
811 817anti-parallel
Strand 4
A
802 803anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 784first strand
Strand 2
A
792 796anti-parallel
Strand 3
A
811 817anti-parallel
Strand 4
A
827 833anti-parallel
Strand 5
A
877 880anti-parallel
Strand 6
A
869 871anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
885 887first strand
Strand 2
A
952 955anti-parallel
Strand 3
A
960 962anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 292first strand
Strand 2
B
160 166parallel
Strand 3
B
513 521parallel
Strand 4
B
550 558parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
665 666first strand
Strand 2
B
870 871anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
683 688first strand
Strand 2
B
672 678anti-parallel
Strand 3
B
827 834anti-parallel
Strand 4
B
801 805anti-parallel
Strand 5
B
727 733anti-parallel
Strand 6
B
739 743anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
691 695first strand
Strand 2
B
750 754anti-parallel
Strand 3
B
770 774anti-parallel
Strand 4
B
795 799anti-parallel
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