Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SOA entry

There are 2 chains in PDB entry 8SOA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 37	LEU 1092
B	THR 7	SER 873

There are 63 helices in PDB entry 8SOA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	82	Right-handed alpha
Helix 2	AA2	A	84	91	Right-handed alpha
Helix 3	AA3	A	115	118	Right-handed 310
Helix 4	AA4	A	119	129	Right-handed alpha
Helix 5	AA5	A	144	159	Right-handed alpha
Helix 6	AA6	A	171	180	Right-handed alpha
Helix 7	AA7	A	180	189	Right-handed alpha
Helix 8	AA8	A	192	199	Right-handed alpha
Helix 9	AA9	A	208	213	Right-handed alpha
Helix 10	AB1	A	240	252	Right-handed alpha
Helix 11	AB2	A	255	260	Right-handed alpha
Helix 12	AB3	A	291	300	Right-handed alpha
Helix 13	AB4	A	312	317	Right-handed 310
Helix 14	AB5	A	355	357	Right-handed 310
Helix 15	AB6	A	421	423	Right-handed 310
Helix 16	AB7	A	499	503	Right-handed 310
Helix 17	AB8	A	548	560	Right-handed alpha
Helix 18	AB9	A	568	578	Right-handed alpha
Helix 19	AC1	A	585	587	Right-handed 310
Helix 20	AC2	A	588	593	Right-handed alpha
Helix 21	AC3	A	600	613	Right-handed alpha
Helix 22	AC4	A	623	630	Right-handed alpha
Helix 23	AC5	A	638	649	Right-handed alpha
Helix 24	AC6	A	652	665	Right-handed alpha
Helix 25	AC7	A	666	670	Right-handed 310
Helix 26	AC8	A	675	688	Right-handed alpha
Helix 27	AC9	A	688	706	Right-handed alpha
Helix 28	AD1	A	709	725	Right-handed alpha
Helix 29	AD2	A	725	752	Right-handed alpha
Helix 30	AD3	A	761	777	Right-handed alpha
Helix 31	AD4	A	845	858	Right-handed alpha
Helix 32	AD5	A	888	892	Right-handed alpha
Helix 33	AD6	A	905	915	Right-handed alpha
Helix 34	AD7	A	917	942	Right-handed alpha
Helix 35	AD8	A	948	950	Right-handed 310
Helix 36	AD9	A	988	994	Right-handed alpha
Helix 37	AE1	A	1003	1022	Right-handed alpha
Helix 38	AE2	A	1023	1038	Right-handed alpha
Helix 39	AE3	A	1049	1054	Right-handed alpha
Helix 40	AE4	A	1060	1066	Right-handed alpha
Helix 41	AE5	A	1066	1079	Right-handed alpha
Helix 42	AE6	A	1081	1092	Right-handed alpha
Helix 43	AE7	B	8	21	Right-handed alpha
Helix 44	AE8	B	39	49	Right-handed alpha
Helix 45	AE9	B	51	71	Right-handed alpha
Helix 46	AF1	B	78	92	Right-handed alpha
Helix 47	AF2	B	100	111	Right-handed alpha
Helix 48	AF3	B	118	136	Right-handed alpha
Helix 49	AF4	B	138	150	Right-handed alpha
Helix 50	AF5	B	172	184	Right-handed alpha
Helix 51	AF6	B	188	206	Right-handed alpha
Helix 52	AF7	B	207	209	Right-handed 310
Helix 53	AF8	B	210	220	Right-handed alpha
Helix 54	AF9	B	222	242	Right-handed alpha
Helix 55	AG1	B	245	265	Right-handed alpha
Helix 56	AG2	B	266	270	Right-handed 310
Helix 57	AG3	B	298	305	Right-handed alpha
Helix 58	AG4	B	524	543	Right-handed alpha
Helix 59	AG5	B	545	549	Right-handed 310
Helix 60	AG6	B	605	613	Right-handed alpha
Helix 61	AG7	B	613	620	Right-handed alpha
Helix 62	AG8	B	650	663	Right-handed alpha
Helix 63	AG9	B	696	702	Right-handed alpha

There are 12 sheets in PDB entry 8SOA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	133	139	parallel
Strand 4	A	96	102	anti-parallel
Strand 5	A	105	108	anti-parallel
Strand 6	A	325	326	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	235	first strand
Strand 2	A	220	226	anti-parallel
Strand 3	A	303	308	parallel
Strand 4	A	271	274	anti-parallel
Strand 5	A	280	281	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	527	528	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	419	first strand
Strand 2	A	360	369	anti-parallel
Strand 3	A	515	520	anti-parallel
Strand 4	A	478	483	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	402	403	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	428	436	anti-parallel
Strand 4	A	460	467	anti-parallel
Strand 5	A	485	486	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	A	788	796	anti-parallel
Strand 3	A	814	817	anti-parallel
Strand 4	A	827	834	anti-parallel
Strand 5	A	876	880	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	887	first strand
Strand 2	A	952	955	anti-parallel
Strand 3	A	960	962	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	160	165	parallel
Strand 3	B	514	521	parallel
Strand 4	B	552	558	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	B	869	871	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	688	first strand
Strand 2	B	672	677	anti-parallel
Strand 3	B	829	834	anti-parallel
Strand 4	B	802	805	anti-parallel
Strand 5	B	727	733	anti-parallel
Strand 6	B	739	743	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	799	first strand
Strand 2	B	770	774	anti-parallel
Strand 3	B	750	754	anti-parallel
Strand 4	B	691	695	anti-parallel
Strand 5	B	813	816	anti-parallel
Strand 6	B	823	825	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SOA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOA