Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SOC entry

There are 4 chains in PDB entry 8SOC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 37	ASP 1077
B	THR 7	PHE 872
C	SER 2	ASN 340
G	ASN 4	PHE 67

There are 69 helices in PDB entry 8SOC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	82	Right-handed alpha
Helix 2	AA2	A	84	91	Right-handed alpha
Helix 3	AA3	A	119	129	Right-handed alpha
Helix 4	AA4	A	144	159	Right-handed alpha
Helix 5	AA5	A	171	180	Right-handed alpha
Helix 6	AA6	A	180	190	Right-handed alpha
Helix 7	AA7	A	192	199	Right-handed alpha
Helix 8	AA8	A	208	214	Right-handed alpha
Helix 9	AA9	A	215	217	Right-handed 310
Helix 10	AB1	A	240	252	Right-handed alpha
Helix 11	AB2	A	266	270	Right-handed 310
Helix 12	AB3	A	292	300	Right-handed alpha
Helix 13	AB4	A	312	317	Right-handed 310
Helix 14	AB5	A	345	349	Right-handed 310
Helix 15	AB6	A	355	357	Right-handed 310
Helix 16	AB7	A	421	423	Right-handed 310
Helix 17	AB8	A	499	503	Right-handed 310
Helix 18	AB9	A	538	543	Right-handed alpha
Helix 19	AC1	A	548	561	Right-handed alpha
Helix 20	AC2	A	568	578	Right-handed alpha
Helix 21	AC3	A	578	583	Right-handed alpha
Helix 22	AC4	A	584	587	Right-handed 310
Helix 23	AC5	A	588	593	Right-handed alpha
Helix 24	AC6	A	600	611	Right-handed alpha
Helix 25	AC7	A	614	620	Right-handed alpha
Helix 26	AC8	A	623	632	Right-handed alpha
Helix 27	AC9	A	639	649	Right-handed alpha
Helix 28	AD1	A	652	665	Right-handed alpha
Helix 29	AD2	A	666	670	Right-handed 310
Helix 30	AD3	A	675	688	Right-handed alpha
Helix 31	AD4	A	688	704	Right-handed alpha
Helix 32	AD5	A	709	722	Right-handed alpha
Helix 33	AD6	A	725	751	Right-handed alpha
Helix 34	AD7	A	761	777	Right-handed alpha
Helix 35	AD8	A	797	801	Right-handed 310
Helix 36	AD9	A	838	858	Right-handed alpha
Helix 37	AE1	A	888	894	Right-handed alpha
Helix 38	AE2	A	905	915	Right-handed alpha
Helix 39	AE3	A	917	943	Right-handed alpha
Helix 40	AE4	A	948	950	Right-handed 310
Helix 41	AE5	A	988	995	Right-handed alpha
Helix 42	AE6	A	1003	1021	Right-handed alpha
Helix 43	AE7	A	1023	1038	Right-handed alpha
Helix 44	AE8	A	1048	1054	Right-handed alpha
Helix 45	AE9	A	1060	1077	Right-handed alpha
Helix 46	AF1	B	8	22	Right-handed alpha
Helix 47	AF2	B	39	50	Right-handed alpha
Helix 48	AF3	B	51	73	Right-handed alpha
Helix 49	AF4	B	78	91	Right-handed alpha
Helix 50	AF5	B	100	111	Right-handed alpha
Helix 51	AF6	B	118	136	Right-handed alpha
Helix 52	AF7	B	138	149	Right-handed alpha
Helix 53	AF8	B	172	184	Right-handed alpha
Helix 54	AF9	B	188	206	Right-handed alpha
Helix 55	AG1	B	207	209	Right-handed 310
Helix 56	AG2	B	210	221	Right-handed alpha
Helix 57	AG3	B	222	242	Right-handed alpha
Helix 58	AG4	B	247	265	Right-handed alpha
Helix 59	AG5	B	298	305	Right-handed alpha
Helix 60	AG6	B	522	543	Right-handed alpha
Helix 61	AG7	B	545	550	Right-handed alpha
Helix 62	AG8	B	606	613	Right-handed alpha
Helix 63	AG9	B	613	620	Right-handed alpha
Helix 64	AH1	B	650	663	Right-handed alpha
Helix 65	AH2	C	3	26	Right-handed alpha
Helix 66	AH3	C	29	34	Right-handed alpha
Helix 67	AH4	G	5	24	Right-handed alpha
Helix 68	AH5	G	29	45	Right-handed alpha
Helix 69	AH6	G	55	59	Right-handed 310

There are 18 sheets in PDB entry 8SOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	133	139	parallel
Strand 4	A	96	102	anti-parallel
Strand 5	A	105	108	anti-parallel
Strand 6	A	325	326	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	236	first strand
Strand 2	A	219	225	anti-parallel
Strand 3	A	304	306	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	527	528	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	419	first strand
Strand 2	A	360	369	anti-parallel
Strand 3	A	515	520	anti-parallel
Strand 4	A	478	483	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	393	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	402	403	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	428	436	anti-parallel
Strand 4	A	459	467	anti-parallel
Strand 5	A	485	486	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	811	816	anti-parallel
Strand 3	A	827	834	anti-parallel
Strand 4	A	876	880	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	887	first strand
Strand 2	A	952	955	anti-parallel
Strand 3	A	960	962	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	292	first strand
Strand 2	B	159	166	parallel
Strand 3	B	513	521	parallel
Strand 4	B	551	558	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	688	first strand
Strand 2	B	672	678	anti-parallel
Strand 3	B	827	834	anti-parallel
Strand 4	B	801	805	anti-parallel
Strand 5	B	727	732	anti-parallel
Strand 6	B	740	743	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	694	first strand
Strand 2	B	750	754	anti-parallel
Strand 3	B	770	775	anti-parallel
Strand 4	B	795	799	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	336	340	anti-parallel
Strand 3	C	327	330	anti-parallel
Strand 4	C	317	320	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	120	125	anti-parallel
Strand 4	C	134	140	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SOC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOC