Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SOI entry

There are 4 chains in PDB entry 8SOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 600
B
 MET 1LEU 597
C
 HIS 840LEU 1044
D
 ASP 462ALA 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 8SOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed alpha
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
39 41Right-handed 310
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
76 81Right-handed alpha
Helix 6
AA6
A
93 106Right-handed alpha
Helix 7
AA7
A
111 180Right-handed alpha
Helix 8
AA8
A
181 200Right-handed alpha
Helix 9
AA9
A
307 314Right-handed alpha
Helix 10
AB1
A
320 335Right-handed alpha
Helix 11
AB2
A
336 355Right-handed alpha
Helix 12
AB3
A
356 361Right-handed alpha
Helix 13
AB4
A
364 403Right-handed alpha
Helix 14
AB5
A
407 543Right-handed alpha
Helix 15
AB6
A
578 589Right-handed alpha
Helix 16
AB7
A
590 594Right-handed 310
Helix 17
AB8
B
17 23Right-handed 310
Helix 18
AB9
B
24 35Right-handed alpha
Helix 19
AC1
B
39 41Right-handed 310
Helix 20
AC2
B
76 81Right-handed alpha
Helix 21
AC3
B
93 108Right-handed alpha
Helix 22
AC4
B
111 200Right-handed alpha
Helix 23
AC5
B
207 212Right-handed alpha
Helix 24
AC6
B
213 216Right-handed 310
Helix 25
AC7
B
321 335Right-handed alpha
Helix 26
AC8
B
336 355Right-handed alpha
Helix 27
AC9
B
356 361Right-handed alpha
Helix 28
AD1
B
364 404Right-handed alpha
Helix 29
AD2
B
408 491Right-handed alpha
Helix 30
AD3
B
491 543Right-handed alpha
Helix 31
AD4
B
578 587Right-handed alpha
Helix 32
AD5
C
841 864Right-handed alpha
Helix 33
AD6
C
879 891Right-handed alpha
Helix 34
AD7
C
891 923Right-handed alpha
Helix 35
AD8
C
930 971Right-handed alpha
Helix 36
AD9
C
975 997Right-handed alpha
Helix 37
AE1
C
1002 1021Right-handed alpha
Helix 38
AE2
C
1023 1044Right-handed alpha
Helix 39
AE3
D
463 471Right-handed alpha
Helix 40
AE4
D
488 514Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8SOI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
3 7anti-parallel
Strand 3
A
71 75parallel
Strand 4
A
43 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
3 7anti-parallel
Strand 3
B
71 75parallel
Strand 4
B
43 46anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il