Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SOJ entry

There are 4 chains in PDB entry 8SOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 8	SER 1208
B	MET 175	ALA 770
C	MET 2	GLY 120
D	THR 149	ILE 634

There are 69 helices in PDB entry 8SOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	27	Right-handed alpha
Helix 2	AA2	A	37	53	Right-handed alpha
Helix 3	AA3	A	69	77	Right-handed alpha
Helix 4	AA4	A	88	97	Right-handed alpha
Helix 5	AA5	A	150	154	Right-handed 310
Helix 6	AA6	A	205	215	Right-handed alpha
Helix 7	AA7	A	216	219	Right-handed 310
Helix 8	AA8	A	265	269	Right-handed 310
Helix 9	AA9	A	270	275	Right-handed alpha
Helix 10	AB1	A	311	313	Right-handed 310
Helix 11	AB2	A	390	394	Right-handed 310
Helix 12	AB3	A	443	448	Right-handed alpha
Helix 13	AB4	A	449	459	Right-handed alpha
Helix 14	AB5	A	463	482	Right-handed alpha
Helix 15	AB6	A	487	492	Right-handed alpha
Helix 16	AB7	A	501	506	Right-handed alpha
Helix 17	AB8	A	507	515	Right-handed alpha
Helix 18	AB9	A	523	530	Right-handed alpha
Helix 19	AC1	A	551	567	Right-handed alpha
Helix 20	AC2	A	568	573	Right-handed alpha
Helix 21	AC3	A	576	581	Right-handed 310
Helix 22	AC4	A	582	591	Right-handed alpha
Helix 23	AC5	A	598	602	Right-handed 310
Helix 24	AC6	A	644	648	Right-handed 310
Helix 25	AC7	A	671	677	Right-handed 310
Helix 26	AC8	A	790	793	Right-handed 310
Helix 27	AC9	A	803	808	Right-handed 310
Helix 28	AD1	A	842	846	Right-handed 310
Helix 29	AD2	A	865	869	Right-handed 310
Helix 30	AD3	A	871	875	Right-handed 310
Helix 31	AD4	A	951	955	Right-handed 310
Helix 32	AD5	A	1011	1018	Right-handed 310
Helix 33	AD6	A	1090	1098	Right-handed alpha
Helix 34	AD7	A	1100	1112	Right-handed alpha
Helix 35	AD8	A	1136	1146	Right-handed alpha
Helix 36	AD9	B	176	193	Right-handed alpha
Helix 37	AE1	B	205	215	Right-handed alpha
Helix 38	AE2	B	230	240	Right-handed alpha
Helix 39	AE3	B	423	427	Right-handed 310
Helix 40	AE4	B	433	440	Right-handed alpha
Helix 41	AE5	B	506	528	Right-handed alpha
Helix 42	AE6	B	563	580	Right-handed alpha
Helix 43	AE7	B	603	622	Right-handed alpha
Helix 44	AE8	B	629	634	Right-handed alpha
Helix 45	AE9	B	635	643	Right-handed alpha
Helix 46	AF1	B	644	652	Right-handed alpha
Helix 47	AF2	B	654	656	Right-handed 310
Helix 48	AF3	B	657	680	Right-handed alpha
Helix 49	AF4	B	700	712	Right-handed alpha
Helix 50	AF5	B	727	738	Right-handed alpha
Helix 51	AF6	B	743	758	Right-handed alpha
Helix 52	AF7	C	11	17	Right-handed alpha
Helix 53	AF8	C	101	119	Right-handed alpha
Helix 54	AF9	D	206	211	Right-handed alpha
Helix 55	AG1	D	212	217	Right-handed 310
Helix 56	AG2	D	226	231	Right-handed alpha
Helix 57	AG3	D	269	273	Right-handed 310
Helix 58	AG4	D	282	298	Right-handed alpha
Helix 59	AG5	D	316	322	Right-handed alpha
Helix 60	AG6	D	347	353	Right-handed alpha
Helix 61	AG7	D	373	376	Right-handed 310
Helix 62	AG8	D	393	402	Right-handed alpha
Helix 63	AG9	D	410	414	Right-handed 310
Helix 64	AH1	D	447	450	Right-handed 310
Helix 65	AH2	D	459	470	Right-handed alpha
Helix 66	AH3	D	511	518	Right-handed 310
Helix 67	AH4	D	525	533	Right-handed alpha
Helix 68	AH5	D	576	591	Right-handed alpha
Helix 69	AH6	D	631	634	Right-handed 310

There are 26 sheets in PDB entry 8SOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	111	118	parallel
Strand 3	A	134	136	anti-parallel
Strand 4	A	141	146	anti-parallel
Strand 5	A	178	181	parallel
Strand 6	A	163	166	anti-parallel
Strand 7	A	81	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	111	118	parallel
Strand 3	A	157	160	anti-parallel
Strand 4	A	186	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	204	first strand
Strand 2	A	315	318	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	243	250	anti-parallel
Strand 3	A	258	263	anti-parallel
Strand 4	A	298	301	parallel
Strand 5	A	286	289	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	243	250	anti-parallel
Strand 3	A	226	233	anti-parallel
Strand 4	A	280	283	anti-parallel
Strand 5	A	307	309	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	539	541	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	433	first strand
Strand 2	A	400	409	anti-parallel
Strand 3	A	420	422	anti-parallel
Strand 4	A	379	382	parallel
Strand 5	A	372	375	anti-parallel
Strand 6	A	354	367	anti-parallel
Strand 7	A	400	409	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	548	first strand
Strand 2	A	605	606	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	596	first strand
Strand 2	A	658	665	anti-parallel
Strand 3	A	684	693	anti-parallel
Strand 4	A	628	637	parallel
Strand 5	A	640	641	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	596	first strand
Strand 2	A	658	665	anti-parallel
Strand 3	A	684	693	anti-parallel
Strand 4	A	628	637	parallel
Strand 5	A	621	625	anti-parallel
Strand 6	A	608	614	anti-parallel
Strand 7	A	651	654	anti-parallel
Strand 8	A	697	700	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	744	first strand
Strand 2	A	760	777	anti-parallel
Strand 3	A	795	801	anti-parallel
Strand 4	A	851	853	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	781	first strand
Strand 2	A	760	777	anti-parallel
Strand 3	A	728	738	anti-parallel
Strand 4	A	816	822	anti-parallel
Strand 5	A	859	863	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	996	first strand
Strand 2	A	966	976	anti-parallel
Strand 3	A	982	985	anti-parallel
Strand 4	A	945	950	parallel
Strand 5	A	928	935	anti-parallel
Strand 6	A	895	908	anti-parallel
Strand 7	A	966	976	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1024	1027	first strand
Strand 2	A	1156	1161	anti-parallel
Strand 3	A	1194	1202	anti-parallel
Strand 4	A	1083	1089	parallel
Strand 5	A	1067	1078	anti-parallel
Strand 6	A	1030	1043	anti-parallel
Strand 7	A	1046	1051	anti-parallel
Strand 8	A	1054	1055	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1024	1027	first strand
Strand 2	A	1156	1161	anti-parallel
Strand 3	A	1194	1202	anti-parallel
Strand 4	A	1083	1089	parallel
Strand 5	A	1067	1078	anti-parallel
Strand 6	A	1030	1043	anti-parallel
Strand 7	A	1116	1120	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1181	first strand
Strand 2	A	1184	1190	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	459	471	parallel
Strand 3	B	534	544	anti-parallel
Strand 4	B	547	558	anti-parallel
Strand 5	B	486	492	parallel
Strand 6	B	475	481	anti-parallel
Strand 7	B	459	471	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	450	452	anti-parallel
Strand 3	B	455	457	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	628	first strand
Strand 2	B	693	696	anti-parallel
Strand 3	B	683	684	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	726	first strand
Strand 2	B	767	769	anti-parallel
Strand 3	B	761	764	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	25	32	anti-parallel
Strand 3	C	72	82	anti-parallel
Strand 4	C	86	97	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	244	249	anti-parallel
Strand 3	D	260	265	anti-parallel
Strand 4	D	218	222	parallel
Strand 5	D	178	184	anti-parallel
Strand 6	D	166	175	anti-parallel
Strand 7	D	238	242	anti-parallel
Strand 8	D	274	277	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	337	first strand
Strand 2	D	627	629	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	389	first strand
Strand 2	D	378	382	anti-parallel
Strand 3	D	539	549	anti-parallel
Strand 4	D	554	561	anti-parallel
Strand 5	D	620	625	parallel
Strand 6	D	603	611	anti-parallel
Strand 7	D	358	370	anti-parallel
Strand 8	D	539	549	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	426	first strand
Strand 2	D	432	439	anti-parallel
Strand 3	D	452	456	anti-parallel
Strand 4	D	472	475	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	495	first strand
Strand 2	D	498	500	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOJ