Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SOQ entry

There are 6 chains in PDB entry 8SOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 44	MET 246
B	ASN 46	MET 246
C	GLY 47	MET 246
D	PHE 35	SER 250
E	PRO 49	ASN 244
F	ASN 46	MET 246

There are 63 helices in PDB entry 8SOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	69	Right-handed alpha
Helix 2	AA2	A	125	127	Right-handed 310
Helix 3	AA3	A	128	142	Right-handed alpha
Helix 4	AA4	A	153	155	Right-handed 310
Helix 5	AA5	A	156	163	Right-handed alpha
Helix 6	AA6	A	163	169	Right-handed alpha
Helix 7	AA7	A	182	189	Right-handed alpha
Helix 8	AA8	A	204	209	Right-handed 310
Helix 9	AA9	A	210	219	Right-handed alpha
Helix 10	AB1	A	232	246	Right-handed alpha
Helix 11	AB2	B	58	69	Right-handed alpha
Helix 12	AB3	B	82	88	Right-handed alpha
Helix 13	AB4	B	125	127	Right-handed 310
Helix 14	AB5	B	128	142	Right-handed alpha
Helix 15	AB6	B	153	155	Right-handed 310
Helix 16	AB7	B	156	163	Right-handed alpha
Helix 17	AB8	B	163	170	Right-handed alpha
Helix 18	AB9	B	181	189	Right-handed alpha
Helix 19	AC1	B	204	209	Right-handed 310
Helix 20	AC2	B	210	219	Right-handed alpha
Helix 21	AC3	B	232	245	Right-handed alpha
Helix 22	AC4	C	58	69	Right-handed alpha
Helix 23	AC5	C	83	88	Right-handed alpha
Helix 24	AC6	C	125	127	Right-handed 310
Helix 25	AC7	C	128	142	Right-handed alpha
Helix 26	AC8	C	153	156	Right-handed 310
Helix 27	AC9	C	157	163	Right-handed alpha
Helix 28	AD1	C	163	169	Right-handed alpha
Helix 29	AD2	C	182	189	Right-handed alpha
Helix 30	AD3	C	204	209	Right-handed 310
Helix 31	AD4	C	210	219	Right-handed alpha
Helix 32	AD5	C	232	245	Right-handed alpha
Helix 33	AD6	D	58	67	Right-handed alpha
Helix 34	AD7	D	68	70	Right-handed 310
Helix 35	AD8	D	83	88	Right-handed alpha
Helix 36	AD9	D	125	127	Right-handed 310
Helix 37	AE1	D	128	142	Right-handed alpha
Helix 38	AE2	D	153	155	Right-handed 310
Helix 39	AE3	D	156	163	Right-handed alpha
Helix 40	AE4	D	163	169	Right-handed alpha
Helix 41	AE5	D	181	189	Right-handed alpha
Helix 42	AE6	D	204	209	Right-handed 310
Helix 43	AE7	D	210	220	Right-handed alpha
Helix 44	AE8	D	232	245	Right-handed alpha
Helix 45	AE9	E	58	69	Right-handed alpha
Helix 46	AF1	E	125	127	Right-handed 310
Helix 47	AF2	E	128	142	Right-handed alpha
Helix 48	AF3	E	156	163	Right-handed alpha
Helix 49	AF4	E	163	169	Right-handed alpha
Helix 50	AF5	E	182	191	Right-handed alpha
Helix 51	AF6	E	204	209	Right-handed 310
Helix 52	AF7	E	210	220	Right-handed alpha
Helix 53	AF8	E	232	244	Right-handed alpha
Helix 54	AF9	F	58	69	Right-handed alpha
Helix 55	AG1	F	82	88	Right-handed alpha
Helix 56	AG2	F	125	127	Right-handed 310
Helix 57	AG3	F	128	142	Right-handed alpha
Helix 58	AG4	F	156	163	Right-handed alpha
Helix 59	AG5	F	163	170	Right-handed alpha
Helix 60	AG6	F	181	189	Right-handed alpha
Helix 61	AG7	F	204	209	Right-handed 310
Helix 62	AG8	F	210	219	Right-handed alpha
Helix 63	AG9	F	232	245	Right-handed alpha

There are 12 sheets in PDB entry 8SOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	76	78	parallel
Strand 3	A	104	107	anti-parallel
Strand 4	A	96	99	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	118	123	parallel
Strand 3	A	172	177	parallel
Strand 4	A	195	199	parallel
Strand 5	A	225	227	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	76	79	parallel
Strand 3	B	104	107	anti-parallel
Strand 4	B	96	99	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	118	123	parallel
Strand 3	B	172	177	parallel
Strand 4	B	195	199	parallel
Strand 5	B	225	227	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	76	79	parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	96	99	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	149	first strand
Strand 2	C	118	123	parallel
Strand 3	C	172	177	parallel
Strand 4	C	195	199	parallel
Strand 5	C	225	227	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	76	79	parallel
Strand 3	D	104	107	anti-parallel
Strand 4	D	96	99	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	149	first strand
Strand 2	D	118	123	parallel
Strand 3	D	172	177	parallel
Strand 4	D	195	199	parallel
Strand 5	D	225	227	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	76	79	parallel
Strand 3	E	104	107	anti-parallel
Strand 4	E	96	99	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	149	first strand
Strand 2	E	118	123	parallel
Strand 3	E	173	177	parallel
Strand 4	E	195	199	parallel
Strand 5	E	225	227	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	52	first strand
Strand 2	F	76	78	parallel
Strand 3	F	105	107	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	149	first strand
Strand 2	F	118	123	parallel
Strand 3	F	172	177	parallel
Strand 4	F	195	199	parallel
Strand 5	F	225	227	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOQ