Analysis of interatomic Contacts of Structural Units in PDB entry:
8SOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SOW entry

There are 2 chains in PDB entry 8SOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 2ILE 240
A
 SER 6THR 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8SOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
86 90Right-handed 310
Helix 2
AA2
C
213 217Right-handed 310
Helix 3
AA3
A
7 30Right-handed alpha
Helix 4
AA4
A
35 40Right-handed alpha
Helix 5
AA5
A
52 55Right-handed 310
Helix 6
AA6
A
56 61Right-handed alpha
Helix 7
AA7
A
62 71Right-handed alpha
Helix 8
AA8
A
83 98Right-handed alpha
Helix 9
AA9
A
113 130Right-handed alpha
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There are 5 sheets in PDB entry 8SOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
108 112parallel
Strand 3
C
91 97anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
108 112parallel
Strand 3
C
91 97anti-parallel
Strand 4
C
103 104anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 141first strand
Strand 2
C
153 159anti-parallel
Strand 3
C
204 209anti-parallel
Strand 4
C
196 200anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 146first strand
Strand 2
C
236 239parallel
Strand 3
C
218 224anti-parallel
Strand 4
C
167 172anti-parallel
Strand 5
C
179 183anti-parallel
Strand 6
C
187 188anti-parallel
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