Analysis of interatomic Contacts of Structural Units in PDB entry:
8SP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SP4 entry

There is 1 chain in PDB entry 8SP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 110GLN 968
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8SP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 117Right-handed alpha
Helix 2
AA2
A
122 141Right-handed alpha
Helix 3
AA3
A
155 166Right-handed alpha
Helix 4
AA4
A
182 198Right-handed alpha
Helix 5
AA5
A
208 210Right-handed 310
Helix 6
AA6
A
211 224Right-handed alpha
Helix 7
AA7
A
231 240Right-handed alpha
Helix 8
AA8
A
244 249Right-handed 310
Helix 9
AA9
A
256 262Right-handed alpha
Helix 10
AB1
A
262 272Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
A
293 306Right-handed alpha
Helix 13
AB4
A
320 332Right-handed alpha
Helix 14
AB5
A
338 362Right-handed alpha
Helix 15
AB6
A
366 377Right-handed alpha
Helix 16
AB7
A
382 390Right-handed alpha
Helix 17
AB8
A
395 409Right-handed alpha
Helix 18
AB9
A
441 455Right-handed alpha
Helix 19
AC1
A
459 467Right-handed alpha
Helix 20
AC2
A
469 479Right-handed alpha
Helix 21
AC3
A
488 500Right-handed alpha
Helix 22
AC4
A
512 528Right-handed alpha
Helix 23
AC5
A
539 552Right-handed alpha
Helix 24
AC6
A
586 595Right-handed alpha
Helix 25
AC7
A
616 630Right-handed alpha
Helix 26
AC8
A
638 646Right-handed alpha
Helix 27
AC9
A
646 656Right-handed alpha
Helix 28
AD1
A
662 684Right-handed alpha
Helix 29
AD2
A
686 695Right-handed alpha
Helix 30
AD3
A
695 711Right-handed alpha
Helix 31
AD4
A
712 727Right-handed alpha
Helix 32
AD5
A
764 771Right-handed alpha
Helix 33
AD6
A
781 794Right-handed alpha
Helix 34
AD7
A
827 835Right-handed 310
Helix 35
AD8
A
857 863Right-handed alpha
Helix 36
AD9
A
869 880Right-handed alpha
Helix 37
AE1
A
880 928Right-handed alpha
Helix 38
AE2
A
932 952Right-handed alpha
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There are 4 sheets in PDB entry 8SP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
251 255parallel
Strand 3
A
203 207parallel
Strand 4
A
276 279parallel
Strand 5
A
308 312parallel
Strand 6
A
172 175parallel
Strand 7
A
417 418parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 438first strand
Strand 2
A
606 613parallel
Strand 3
A
575 580parallel
Strand 4
A
505 509parallel
Strand 5
A
559 562parallel
Strand 6
A
531 534parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 732first strand
Strand 2
A
738 742anti-parallel
Strand 3
A
759 762anti-parallel
Strand 4
A
775 776parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 845first strand
Strand 2
A
814 823anti-parallel
Strand 3
A
954 966anti-parallel
Strand 4
A
799 805parallel
Strand 5
A
865 866anti-parallel
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