Analysis of interatomic Contacts of Structural Units in PDB entry:
8SP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SP7 entry

There is 1 chain in PDB entry 8SP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ILE 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8SP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
A
133 136Right-handed 310
Helix 5
AA5
A
151 155Right-handed 310
Helix 6
AA6
A
162 175Right-handed alpha
Helix 7
AA7
A
180 185Right-handed alpha
Helix 8
AA8
A
212 215Right-handed 310
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There are 3 sheets in PDB entry 8SP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
7 14parallel
Strand 5
A
232 238anti-parallel
Strand 6
A
217 223anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
140 145parallel
Strand 5
A
205 210anti-parallel
Strand 6
A
177 179anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
200 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il