Analysis of interatomic Contacts of Structural Units in PDB entry:
8SP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SP8 entry

There are 4 chains in PDB entry 8SP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 27	ASP 638
B	GLU 27	ASP 638
C	GLU 27	ASP 638
D	GLU 27	ASP 638

There are148 helices in PDB entry 8SP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	46	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	57	68	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	103	106	Right-handed 310
Helix 7	AA7	A	119	127	Right-handed alpha
Helix 8	AA8	A	129	139	Right-handed alpha
Helix 9	AA9	A	165	173	Right-handed alpha
Helix 10	AB1	A	175	185	Right-handed alpha
Helix 11	AB2	A	198	203	Right-handed alpha
Helix 12	AB3	A	204	206	Right-handed 310
Helix 13	AB4	A	209	222	Right-handed alpha
Helix 14	AB5	A	231	235	Right-handed 310
Helix 15	AB6	A	242	250	Right-handed alpha
Helix 16	AB7	A	252	259	Right-handed alpha
Helix 17	AB8	A	291	298	Right-handed alpha
Helix 18	AB9	A	303	310	Right-handed 310
Helix 19	AC1	A	313	325	Right-handed alpha
Helix 20	AC2	A	326	331	Right-handed alpha
Helix 21	AC3	A	336	349	Right-handed alpha
Helix 22	AC4	A	372	377	Right-handed alpha
Helix 23	AC5	A	379	403	Right-handed alpha
Helix 24	AC6	A	403	410	Right-handed alpha
Helix 25	AC7	A	415	420	Right-handed alpha
Helix 26	AC8	A	424	445	Right-handed alpha
Helix 27	AC9	A	450	464	Right-handed alpha
Helix 28	AD1	A	465	467	Right-handed 310
Helix 29	AD2	A	469	473	Right-handed 310
Helix 30	AD3	A	478	485	Right-handed alpha
Helix 31	AD4	A	486	491	Right-handed 310
Helix 32	AD5	A	497	512	Right-handed alpha
Helix 33	AD6	A	525	538	Right-handed alpha
Helix 34	AD7	A	552	570	Right-handed alpha
Helix 35	AD8	A	572	580	Right-handed alpha
Helix 36	AD9	A	587	608	Right-handed alpha
Helix 37	AE1	A	620	624	Right-handed 310
Helix 38	AE2	B	28	46	Right-handed alpha
Helix 39	AE3	B	47	56	Right-handed alpha
Helix 40	AE4	B	57	68	Right-handed alpha
Helix 41	AE5	B	81	89	Right-handed alpha
Helix 42	AE6	B	91	102	Right-handed alpha
Helix 43	AE7	B	103	106	Right-handed 310
Helix 44	AE8	B	119	127	Right-handed alpha
Helix 45	AE9	B	129	139	Right-handed alpha
Helix 46	AF1	B	165	173	Right-handed alpha
Helix 47	AF2	B	175	185	Right-handed alpha
Helix 48	AF3	B	198	203	Right-handed alpha
Helix 49	AF4	B	204	206	Right-handed 310
Helix 50	AF5	B	209	222	Right-handed alpha
Helix 51	AF6	B	231	235	Right-handed 310
Helix 52	AF7	B	242	250	Right-handed alpha
Helix 53	AF8	B	252	259	Right-handed alpha
Helix 54	AF9	B	291	298	Right-handed alpha
Helix 55	AG1	B	303	310	Right-handed 310
Helix 56	AG2	B	313	325	Right-handed alpha
Helix 57	AG3	B	326	331	Right-handed alpha
Helix 58	AG4	B	336	349	Right-handed alpha
Helix 59	AG5	B	372	377	Right-handed alpha
Helix 60	AG6	B	379	403	Right-handed alpha
Helix 61	AG7	B	403	410	Right-handed alpha
Helix 62	AG8	B	415	420	Right-handed alpha
Helix 63	AG9	B	424	445	Right-handed alpha
Helix 64	AH1	B	450	464	Right-handed alpha
Helix 65	AH2	B	465	467	Right-handed 310
Helix 66	AH3	B	469	473	Right-handed 310
Helix 67	AH4	B	478	485	Right-handed alpha
Helix 68	AH5	B	486	491	Right-handed 310
Helix 69	AH6	B	497	512	Right-handed alpha
Helix 70	AH7	B	525	538	Right-handed alpha
Helix 71	AH8	B	552	570	Right-handed alpha
Helix 72	AH9	B	572	580	Right-handed alpha
Helix 73	AI1	B	587	608	Right-handed alpha
Helix 74	AI2	B	620	624	Right-handed 310
Helix 75	AI3	C	28	46	Right-handed alpha
Helix 76	AI4	C	47	56	Right-handed alpha
Helix 77	AI5	C	57	68	Right-handed alpha
Helix 78	AI6	C	81	89	Right-handed alpha
Helix 79	AI7	C	91	102	Right-handed alpha
Helix 80	AI8	C	103	106	Right-handed 310
Helix 81	AI9	C	119	127	Right-handed alpha
Helix 82	AJ1	C	129	139	Right-handed alpha
Helix 83	AJ2	C	165	173	Right-handed alpha
Helix 84	AJ3	C	175	185	Right-handed alpha
Helix 85	AJ4	C	198	203	Right-handed alpha
Helix 86	AJ5	C	204	206	Right-handed 310
Helix 87	AJ6	C	209	222	Right-handed alpha
Helix 88	AJ7	C	231	235	Right-handed 310
Helix 89	AJ8	C	242	250	Right-handed alpha
Helix 90	AJ9	C	252	259	Right-handed alpha
Helix 91	AK1	C	291	298	Right-handed alpha
Helix 92	AK2	C	303	310	Right-handed 310
Helix 93	AK3	C	313	325	Right-handed alpha
Helix 94	AK4	C	326	331	Right-handed alpha
Helix 95	AK5	C	336	349	Right-handed alpha
Helix 96	AK6	C	372	377	Right-handed alpha
Helix 97	AK7	C	379	403	Right-handed alpha
Helix 98	AK8	C	403	410	Right-handed alpha
Helix 99	AK9	C	415	420	Right-handed alpha
Helix 100	AL1	C	424	445	Right-handed alpha
Helix 101	AL2	C	450	464	Right-handed alpha
Helix 102	AL3	C	465	467	Right-handed 310
Helix 103	AL4	C	469	473	Right-handed 310
Helix 104	AL5	C	478	485	Right-handed alpha
Helix 105	AL6	C	486	491	Right-handed 310
Helix 106	AL7	C	497	512	Right-handed alpha
Helix 107	AL8	C	525	538	Right-handed alpha
Helix 108	AL9	C	552	570	Right-handed alpha
Helix 109	AM1	C	572	580	Right-handed alpha
Helix 110	AM2	C	587	608	Right-handed alpha
Helix 111	AM3	C	620	624	Right-handed 310
Helix 112	AM4	D	28	46	Right-handed alpha
Helix 113	AM5	D	47	56	Right-handed alpha
Helix 114	AM6	D	57	68	Right-handed alpha
Helix 115	AM7	D	81	89	Right-handed alpha
Helix 116	AM8	D	91	102	Right-handed alpha
Helix 117	AM9	D	103	106	Right-handed 310
Helix 118	AN1	D	119	127	Right-handed alpha
Helix 119	AN2	D	129	139	Right-handed alpha
Helix 120	AN3	D	165	173	Right-handed alpha
Helix 121	AN4	D	175	185	Right-handed alpha
Helix 122	AN5	D	198	203	Right-handed alpha
Helix 123	AN6	D	204	206	Right-handed 310
Helix 124	AN7	D	209	222	Right-handed alpha
Helix 125	AN8	D	231	235	Right-handed 310
Helix 126	AN9	D	242	250	Right-handed alpha
Helix 127	AO1	D	252	259	Right-handed alpha
Helix 128	AO2	D	291	298	Right-handed alpha
Helix 129	AO3	D	303	310	Right-handed 310
Helix 130	AO4	D	313	325	Right-handed alpha
Helix 131	AO5	D	326	331	Right-handed alpha
Helix 132	AO6	D	336	349	Right-handed alpha
Helix 133	AO7	D	372	377	Right-handed alpha
Helix 134	AO8	D	379	403	Right-handed alpha
Helix 135	AO9	D	403	410	Right-handed alpha
Helix 136	AP1	D	415	420	Right-handed alpha
Helix 137	AP2	D	424	445	Right-handed alpha
Helix 138	AP3	D	450	464	Right-handed alpha
Helix 139	AP4	D	465	467	Right-handed 310
Helix 140	AP5	D	469	473	Right-handed 310
Helix 141	AP6	D	478	485	Right-handed alpha
Helix 142	AP7	D	486	491	Right-handed 310
Helix 143	AP8	D	497	512	Right-handed alpha
Helix 144	AP9	D	525	538	Right-handed alpha
Helix 145	AQ1	D	552	570	Right-handed alpha
Helix 146	AQ2	D	572	580	Right-handed alpha
Helix 147	AQ3	D	587	608	Right-handed alpha
Helix 148	AQ4	D	620	624	Right-handed 310

There are 8 sheets in PDB entry 8SP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	273	278	anti-parallel
Strand 3	A	631	636	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	368	369	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	273	278	anti-parallel
Strand 3	B	631	636	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	368	369	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	273	278	anti-parallel
Strand 3	C	631	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	368	369	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	270	first strand
Strand 2	D	273	278	anti-parallel
Strand 3	D	631	636	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	368	369	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SP8