Analysis of interatomic Contacts of Structural Units in PDB entry:
8SPE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SPE entry

There are 36 chains in PDB entry 8SPE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 55	LYS 123
B	ASP 53	LYS 123
C	GLY 48	ALA 124
D	SER 55	LEU 125
Q	SER 55	LEU 125
R	SER 55	ALA 124
S	SER 55	ALA 124
T	SER 55	ALA 124
G	LYS 57	LYS 123
H	LYS 57	ALA 124
U	GLY 51	LYS 123
V	SER 55	LEU 122
E	ASP 53	ALA 124
F	SER 52	LYS 123
I	GLY 51	LYS 123
J	ALA 54	ALA 124
K	THR 56	ALA 124
L	ALA 54	LYS 123
M	GLY 48	LYS 123
N	SER 55	ALA 124
O	THR 56	ALA 124
P	ASP 53	ALA 124
W	SER 55	LYS 123
X	LYS 58	LEU 122
Y	ALA 54	LYS 123
Z	SER 55	LEU 125
a	ALA 54	LYS 123
b	SER 55	SER 126
c	SER 55	ALA 124
d	ASP 53	LYS 123
e	SER 55	ALA 124
f	THR 56	LYS 123
g	LYS 57	VAL 121
h	SER 55	LEU 122
i	LYS 58	LEU 125
j	SER 55	LEU 122

There are143 helices in PDB entry 8SPE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	72	Right-handed alpha
Helix 2	AA2	A	73	81	Right-handed alpha
Helix 3	AA3	A	87	100	Right-handed alpha
Helix 4	AA4	A	106	122	Right-handed alpha
Helix 5	AA5	B	54	73	Right-handed alpha
Helix 6	AA6	B	73	83	Right-handed alpha
Helix 7	AA7	B	87	100	Right-handed alpha
Helix 8	AA8	B	106	123	Right-handed alpha
Helix 9	AA9	C	49	72	Right-handed alpha
Helix 10	AB1	C	73	81	Right-handed alpha
Helix 11	AB2	C	87	100	Right-handed alpha
Helix 12	AB3	C	106	123	Right-handed alpha
Helix 13	AB4	D	56	73	Right-handed alpha
Helix 14	AB5	D	73	83	Right-handed alpha
Helix 15	AB6	D	87	100	Right-handed alpha
Helix 16	AB7	D	106	124	Right-handed alpha
Helix 17	AB8	Q	56	73	Right-handed alpha
Helix 18	AB9	Q	73	82	Right-handed alpha
Helix 19	AC1	Q	87	100	Right-handed alpha
Helix 20	AC2	Q	106	125	Right-handed alpha
Helix 21	AC3	R	56	73	Right-handed alpha
Helix 22	AC4	R	73	81	Right-handed alpha
Helix 23	AC5	R	87	101	Right-handed alpha
Helix 24	AC6	R	106	122	Right-handed alpha
Helix 25	AC7	S	56	73	Right-handed alpha
Helix 26	AC8	S	73	83	Right-handed alpha
Helix 27	AC9	S	87	100	Right-handed alpha
Helix 28	AD1	S	106	122	Right-handed alpha
Helix 29	AD2	T	56	72	Right-handed alpha
Helix 30	AD3	T	73	82	Right-handed alpha
Helix 31	AD4	T	87	100	Right-handed alpha
Helix 32	AD5	T	106	122	Right-handed alpha
Helix 33	AD6	G	58	73	Right-handed alpha
Helix 34	AD7	G	88	100	Right-handed alpha
Helix 35	AD8	G	106	122	Right-handed alpha
Helix 36	AD9	H	58	72	Right-handed alpha
Helix 37	AE1	H	73	80	Right-handed alpha
Helix 38	AE2	H	89	100	Right-handed alpha
Helix 39	AE3	H	106	124	Right-handed alpha
Helix 40	AE4	U	52	72	Right-handed alpha
Helix 41	AE5	U	73	82	Right-handed alpha
Helix 42	AE6	U	89	100	Right-handed alpha
Helix 43	AE7	U	106	122	Right-handed alpha
Helix 44	AE8	V	56	73	Right-handed alpha
Helix 45	AE9	V	73	81	Right-handed alpha
Helix 46	AF1	V	88	100	Right-handed alpha
Helix 47	AF2	V	106	122	Right-handed alpha
Helix 48	AF3	E	54	73	Right-handed alpha
Helix 49	AF4	E	73	82	Right-handed alpha
Helix 50	AF5	E	87	101	Right-handed alpha
Helix 51	AF6	E	106	122	Right-handed alpha
Helix 52	AF7	F	53	73	Right-handed alpha
Helix 53	AF8	F	73	82	Right-handed alpha
Helix 54	AF9	F	87	101	Right-handed alpha
Helix 55	AG1	F	106	122	Right-handed alpha
Helix 56	AG2	I	52	72	Right-handed alpha
Helix 57	AG3	I	87	100	Right-handed alpha
Helix 58	AG4	I	106	122	Right-handed alpha
Helix 59	AG5	J	56	73	Right-handed alpha
Helix 60	AG6	J	73	82	Right-handed alpha
Helix 61	AG7	J	87	100	Right-handed alpha
Helix 62	AG8	J	106	123	Right-handed alpha
Helix 63	AG9	K	57	72	Right-handed alpha
Helix 64	AH1	K	73	82	Right-handed alpha
Helix 65	AH2	K	87	100	Right-handed alpha
Helix 66	AH3	K	106	123	Right-handed alpha
Helix 67	AH4	L	55	73	Right-handed alpha
Helix 68	AH5	L	73	81	Right-handed alpha
Helix 69	AH6	L	88	100	Right-handed alpha
Helix 70	AH7	L	106	123	Right-handed alpha
Helix 71	AH8	M	49	73	Right-handed alpha
Helix 72	AH9	M	73	81	Right-handed alpha
Helix 73	AI1	M	88	100	Right-handed alpha
Helix 74	AI2	M	106	122	Right-handed alpha
Helix 75	AI3	N	56	73	Right-handed alpha
Helix 76	AI4	N	73	83	Right-handed alpha
Helix 77	AI5	N	87	100	Right-handed alpha
Helix 78	AI6	N	106	123	Right-handed alpha
Helix 79	AI7	O	57	71	Right-handed alpha
Helix 80	AI8	O	73	80	Right-handed alpha
Helix 81	AI9	O	88	100	Right-handed alpha
Helix 82	AJ1	O	106	123	Right-handed alpha
Helix 83	AJ2	P	54	72	Right-handed alpha
Helix 84	AJ3	P	73	80	Right-handed alpha
Helix 85	AJ4	P	88	100	Right-handed alpha
Helix 86	AJ5	P	106	123	Right-handed alpha
Helix 87	AJ6	W	56	72	Right-handed alpha
Helix 88	AJ7	W	73	81	Right-handed alpha
Helix 89	AJ8	W	87	100	Right-handed alpha
Helix 90	AJ9	W	106	121	Right-handed alpha
Helix 91	AK1	X	59	73	Right-handed alpha
Helix 92	AK2	X	73	81	Right-handed alpha
Helix 93	AK3	X	87	100	Right-handed alpha
Helix 94	AK4	X	106	122	Right-handed alpha
Helix 95	AK5	Y	55	73	Right-handed alpha
Helix 96	AK6	Y	73	81	Right-handed alpha
Helix 97	AK7	Y	87	98	Right-handed alpha
Helix 98	AK8	Y	106	122	Right-handed alpha
Helix 99	AK9	Z	56	72	Right-handed alpha
Helix 100	AL1	Z	73	83	Right-handed alpha
Helix 101	AL2	Z	88	100	Right-handed alpha
Helix 102	AL3	Z	106	125	Right-handed alpha
Helix 103	AL4	a	55	73	Right-handed alpha
Helix 104	AL5	a	73	82	Right-handed alpha
Helix 105	AL6	a	87	100	Right-handed alpha
Helix 106	AL7	a	106	122	Right-handed alpha
Helix 107	AL8	b	56	72	Right-handed alpha
Helix 108	AL9	b	73	82	Right-handed alpha
Helix 109	AM1	b	87	100	Right-handed alpha
Helix 110	AM2	b	106	124	Right-handed alpha
Helix 111	AM3	c	56	72	Right-handed alpha
Helix 112	AM4	c	73	81	Right-handed alpha
Helix 113	AM5	c	88	100	Right-handed alpha
Helix 114	AM6	c	106	123	Right-handed alpha
Helix 115	AM7	d	54	72	Right-handed alpha
Helix 116	AM8	d	73	83	Right-handed alpha
Helix 117	AM9	d	87	101	Right-handed alpha
Helix 118	AN1	d	106	121	Right-handed alpha
Helix 119	AN2	e	56	72	Right-handed alpha
Helix 120	AN3	e	73	82	Right-handed alpha
Helix 121	AN4	e	88	100	Right-handed alpha
Helix 122	AN5	e	106	122	Right-handed alpha
Helix 123	AN6	f	57	72	Right-handed alpha
Helix 124	AN7	f	73	81	Right-handed alpha
Helix 125	AN8	f	87	97	Right-handed alpha
Helix 126	AN9	f	106	123	Right-handed alpha
Helix 127	AO1	g	58	73	Right-handed alpha
Helix 128	AO2	g	73	81	Right-handed alpha
Helix 129	AO3	g	87	100	Right-handed alpha
Helix 130	AO4	g	106	121	Right-handed alpha
Helix 131	AO5	h	56	73	Right-handed alpha
Helix 132	AO6	h	73	80	Right-handed alpha
Helix 133	AO7	h	81	83	Right-handed 310
Helix 134	AO8	h	87	100	Right-handed alpha
Helix 135	AO9	h	106	122	Right-handed alpha
Helix 136	AP1	i	59	73	Right-handed alpha
Helix 137	AP2	i	73	81	Right-handed alpha
Helix 138	AP3	i	87	100	Right-handed alpha
Helix 139	AP4	i	106	124	Right-handed alpha
Helix 140	AP5	j	56	73	Right-handed alpha
Helix 141	AP6	j	73	82	Right-handed alpha
Helix 142	AP7	j	87	99	Right-handed alpha
Helix 143	AP8	j	106	121	Right-handed alpha

There are no sheets in PDB entry 8SPE

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SPE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SPE