Analysis of interatomic Contacts of Structural Units in PDB entry:
8SPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SPF entry

There are 6 chains in PDB entry 8SPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 53ALA 124
D
 ALA 54ALA 124
A
 LEU 59ALA 124
B
 ALA 54VAL 121
E
 PRO 49SER 126
F
 LEU 50SER 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8SPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
54 72Right-handed alpha
Helix 2
AA2
C
73 82Right-handed alpha
Helix 3
AA3
C
89 100Right-handed alpha
Helix 4
AA4
C
106 124Right-handed alpha
Helix 5
AA5
D
55 73Right-handed alpha
Helix 6
AA6
D
73 82Right-handed alpha
Helix 7
AA7
D
87 100Right-handed alpha
Helix 8
AA8
D
106 124Right-handed alpha
Helix 9
AA9
A
60 73Right-handed alpha
Helix 10
AB1
A
73 81Right-handed alpha
Helix 11
AB2
A
87 100Right-handed alpha
Helix 12
AB3
A
106 124Right-handed alpha
Helix 13
AB4
B
55 74Right-handed alpha
Helix 14
AB5
B
87 100Right-handed alpha
Helix 15
AB6
B
106 121Right-handed alpha
Helix 16
AB7
E
53 73Right-handed alpha
Helix 17
AB8
E
73 82Right-handed alpha
Helix 18
AB9
E
87 100Right-handed alpha
Helix 19
AC1
E
106 124Right-handed alpha
Helix 20
AC2
F
53 73Right-handed alpha
Helix 21
AC3
F
73 82Right-handed alpha
Helix 22
AC4
F
87 100Right-handed alpha
Helix 23
AC5
F
106 126Right-handed alpha
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There are no sheets in PDB entry 8SPF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il