Analysis of interatomic Contacts of Structural Units in PDB entry:
8SPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SPM entry

There is 1 chain in PDB entry 8SPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8SPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 34Right-handed alpha
Helix 2
AA2
A
80 93Right-handed alpha
Helix 3
AA3
A
94 99Right-handed 310
Helix 4
AA4
A
102 106Right-handed alpha
Helix 5
AA5
A
128 134Right-handed alpha
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
201 211Right-handed alpha
Helix 8
AA8
A
225 235Right-handed alpha
Helix 9
AA9
A
262 273Right-handed alpha
Helix 10
AB1
A
274 281Right-handed alpha
Helix 11
AB2
A
311 322Right-handed alpha
Helix 12
AB3
A
350 366Right-handed alpha
Helix 13
AB4
A
377 388Right-handed alpha
Helix 14
AB5
A
404 410Right-handed alpha
Helix 15
AB6
A
411 413Right-handed 310
Helix 16
AB7
A
417 422Right-handed alpha
Helix 17
AB8
A
427 441Right-handed alpha
Helix 18
AB9
A
443 461Right-handed alpha
Helix 19
AC1
A
478 481Right-handed 310
Helix 20
AC2
A
493 497Right-handed 310
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There are 7 sheets in PDB entry 8SPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
193 198parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
165 171anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
46 48anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
107 112anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
151 156anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
464 476anti-parallel
Strand 3
A
288 289anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
464 476anti-parallel
Strand 3
A
239 253anti-parallel
Strand 4
A
392 396anti-parallel
Strand 5
A
341 347parallel
Strand 6
A
370 376parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
338 339anti-parallel
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