Analysis of interatomic Contacts of Structural Units in PDB entry:
8SQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SQH entry

There are 5 chains in PDB entry 8SQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 G 1 U 98
C
 T 10 G 22
D
 C 16 A 46
c
 T 0 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8SQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
181 183Right-handed 310
Helix 7
AA7
A
184 196Right-handed alpha
Helix 8
AA8
A
208 213Right-handed alpha
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
289 306Right-handed alpha
Helix 11
AB2
A
315 343Right-handed alpha
Helix 12
AB3
A
346 352Right-handed alpha
Helix 13
AB4
A
358 364Right-handed alpha
Helix 14
AB5
A
368 383Right-handed alpha
Helix 15
AB6
A
386 395Right-handed alpha
Helix 16
AB7
A
404 410Right-handed 310
Helix 17
AB8
A
411 427Right-handed alpha
Helix 18
AB9
A
430 436Right-handed alpha
Helix 19
AC1
A
436 446Right-handed alpha
Helix 20
AC2
A
483 494Right-handed alpha
Helix 21
AC3
A
512 525Right-handed alpha
Helix 22
AC4
A
541 552Right-handed alpha
Helix 23
AC5
A
553 556Right-handed 310
Helix 24
AC6
A
560 568Right-handed alpha
Helix 25
AC7
A
591 602Right-handed alpha
Helix 26
AC8
A
603 609Right-handed alpha
Helix 27
AC9
A
612 626Right-handed alpha
Helix 28
AD1
A
628 637Right-handed alpha
Helix 29
AD2
A
638 642Right-handed 310
Helix 30
AD3
A
644 652Right-handed alpha
Helix 31
AD4
A
663 668Right-handed alpha
Helix 32
AD5
A
678 685Right-handed alpha
Helix 33
AD6
A
692 699Right-handed alpha
Helix 34
AD7
A
703 712Right-handed alpha
Helix 35
AD8
A
719 726Right-handed alpha
Helix 36
AD9
A
730 751Right-handed alpha
Helix 37
AE1
A
769 777Right-handed alpha
Helix 38
AE2
A
779 792Right-handed alpha
Helix 39
AE3
A
794 799Right-handed alpha
Helix 40
AE4
A
802 807Right-handed 310
Helix 41
AE5
A
808 817Right-handed alpha
Helix 42
AE6
A
851 853Right-handed 310
Helix 43
AE7
A
859 866Right-handed alpha
Helix 44
AE8
A
872 888Right-handed alpha
Helix 45
AE9
A
893 901Right-handed alpha
Helix 46
AF1
A
902 906Right-handed 310
Helix 47
AF2
A
909 913Right-handed 310
Helix 48
AF3
A
917 940Right-handed alpha
Helix 49
AF4
A
960 970Right-handed alpha
Helix 50
AF5
A
980 1001Right-handed alpha
Helix 51
AF6
A
1004 1009Right-handed alpha
Helix 52
AF7
A
1030 1042Right-handed alpha
Helix 53
AF8
A
1043 1047Right-handed 310
Helix 54
AF9
A
1077 1088Right-handed alpha
Helix 55
AG1
A
1127 1132Right-handed alpha
Helix 56
AG2
A
1168 1177Right-handed alpha
Helix 57
AG3
A
1177 1185Right-handed alpha
Helix 58
AG4
A
1191 1195Right-handed 310
Helix 59
AG5
A
1207 1209Right-handed 310
Helix 60
AG6
A
1229 1240Right-handed alpha
Helix 61
AG7
A
1248 1262Right-handed alpha
Helix 62
AG8
A
1264 1281Right-handed alpha
Helix 63
AG9
A
1283 1298Right-handed alpha
Helix 64
AH1
A
1301 1313Right-handed alpha
Helix 65
AH2
A
1314 1316Right-handed 310
Helix 66
AH3
A
1340 1344Right-handed 310
Helix 67
AH4
A
1363 1365Right-handed 310
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There are 11 sheets in PDB entry 8SQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 959first strand
Strand 2
A
758 763parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
263 264anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
579 581anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1133 1134anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1187 1188anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il