Analysis of interatomic Contacts of Structural Units in PDB entry:
8SQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SQZ entry

There are 6 chains in PDB entry 8SQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 583
B
 MET 1LEU 597
C
 HIS 840LEU 1044
D
 HIS 840LEU 1044
E
 ASP 462LEU 516
F
 ASP 462LEU 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8SQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed 310
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
58 63Right-handed 310
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
118 174Right-handed alpha
Helix 6
AA6
A
175 191Right-handed alpha
Helix 7
AA7
A
191 202Right-handed alpha
Helix 8
AA8
A
204 209Right-handed alpha
Helix 9
AA9
A
307 316Right-handed alpha
Helix 10
AB1
A
322 335Right-handed alpha
Helix 11
AB2
A
346 354Right-handed alpha
Helix 12
AB3
A
360 364Right-handed 310
Helix 13
AB4
A
365 384Right-handed alpha
Helix 14
AB5
A
385 391Right-handed alpha
Helix 15
AB6
A
392 404Right-handed alpha
Helix 16
AB7
A
409 412Right-handed 310
Helix 17
AB8
A
413 463Right-handed alpha
Helix 18
AB9
A
465 491Right-handed alpha
Helix 19
AC1
A
491 531Right-handed alpha
Helix 20
AC2
A
531 542Right-handed alpha
Helix 21
AC3
A
549 553Right-handed 310
Helix 22
AC4
A
569 573Right-handed 310
Helix 23
AC5
A
578 583Right-handed alpha
Helix 24
AC6
B
17 22Right-handed 310
Helix 25
AC7
B
24 35Right-handed alpha
Helix 26
AC8
B
36 40Right-handed 310
Helix 27
AC9
B
92 104Right-handed alpha
Helix 28
AD1
B
111 199Right-handed alpha
Helix 29
AD2
B
307 314Right-handed alpha
Helix 30
AD3
B
321 323Right-handed 310
Helix 31
AD4
B
324 335Right-handed alpha
Helix 32
AD5
B
336 354Right-handed alpha
Helix 33
AD6
B
356 400Right-handed alpha
Helix 34
AD7
B
407 544Right-handed alpha
Helix 35
AD8
B
547 552Right-handed alpha
Helix 36
AD9
B
577 586Right-handed alpha
Helix 37
AE1
B
589 591Right-handed 310
Helix 38
AE2
B
592 597Right-handed alpha
Helix 39
AE3
C
844 849Right-handed alpha
Helix 40
AE4
C
849 860Right-handed alpha
Helix 41
AE5
C
880 890Right-handed alpha
Helix 42
AE6
C
891 917Right-handed alpha
Helix 43
AE7
C
930 941Right-handed alpha
Helix 44
AE8
C
942 956Right-handed alpha
Helix 45
AE9
C
957 971Right-handed alpha
Helix 46
AF1
C
975 977Right-handed 310
Helix 47
AF2
C
978 994Right-handed alpha
Helix 48
AF3
C
1003 1012Right-handed alpha
Helix 49
AF4
C
1013 1020Right-handed 310
Helix 50
AF5
C
1025 1044Right-handed alpha
Helix 51
AF6
D
842 865Right-handed alpha
Helix 52
AF7
D
877 881Right-handed 310
Helix 53
AF8
D
882 890Right-handed alpha
Helix 54
AF9
D
892 924Right-handed alpha
Helix 55
AG1
D
931 963Right-handed alpha
Helix 56
AG2
D
964 969Right-handed alpha
Helix 57
AG3
D
975 997Right-handed alpha
Helix 58
AG4
D
1003 1016Right-handed alpha
Helix 59
AG5
D
1017 1022Right-handed 310
Helix 60
AG6
D
1030 1044Right-handed alpha
Helix 61
AG7
E
463 470Right-handed alpha
Helix 62
AG8
E
494 506Right-handed alpha
Helix 63
AG9
E
506 512Right-handed alpha
Helix 64
AH1
F
463 470Right-handed alpha
Helix 65
AH2
F
488 516Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8SQZ.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
71 73anti-parallel
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