Analysis of interatomic Contacts of Structural Units in PDB entry:
8SR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SR0 entry

There are 6 chains in PDB entry 8SR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	ALA 27	LEU 257
Y	GLU 1	SER 119
Z	ASP 1	GLU 109
D	ALA 27	LEU 257
H	VAL 2	VAL 117
L	ASP 1	GLU 109

There are 3 helices in PDB entry 8SR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	232	236	Right-handed 310
Helix 2	AA2	D	140	144	Right-handed 310
Helix 3	AA3	L	63	67	Right-handed 310

There are 22 sheets in PDB entry 8SR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	34	35	first strand
Strand 2	X	166	167	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	40	43	first strand
Strand 2	X	133	136	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	99	102	first strand
Strand 2	X	62	65	anti-parallel
Strand 3	X	147	150	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	185	186	first strand
Strand 2	X	226	228	anti-parallel
Strand 3	X	220	221	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	199	203	first strand
Strand 2	X	240	244	anti-parallel
Strand 3	X	250	253	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	3	4	first strand
Strand 2	Y	24	25	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	18	21	first strand
Strand 2	Y	78	83	anti-parallel
Strand 3	Y	68	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	46	51	first strand
Strand 2	Y	34	39	anti-parallel
Strand 3	Y	92	98	anti-parallel
Strand 4	Y	113	115	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	5	7	first strand
Strand 2	Z	22	24	anti-parallel
Strand 3	Z	74	75	anti-parallel
Strand 4	Z	70	71	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	10	12	first strand
Strand 2	Z	107	109	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	19	20	first strand
Strand 2	Z	78	79	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	49	50	first strand
Strand 2	Z	38	42	anti-parallel
Strand 3	Z	89	93	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	52	53	first strand
Strand 2	Z	57	58	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	134	136	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	66	first strand
Strand 2	D	146	149	anti-parallel
Strand 3	D	162	163	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	185	189	anti-parallel
Strand 3	D	226	228	anti-parallel
Strand 4	D	220	221	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	238	244	anti-parallel
Strand 3	D	251	256	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	78	81	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	93	100	anti-parallel
Strand 5	H	105	109	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	22	24	anti-parallel
Strand 3	L	74	75	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	106	108	parallel
Strand 3	L	89	94	anti-parallel
Strand 4	L	37	42	anti-parallel
Strand 5	L	49	53	anti-parallel
Strand 6	L	57	58	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	78	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SR0