Analysis of interatomic Contacts of Structural Units in PDB entry:
8SRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SRJ entry

There are 4 chains in PDB entry 8SRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 52	ALA 1168
B	VAL 52	ALA 1168
C	VAL 52	ALA 1168
D	VAL 52	ALA 1168

There are200 helices in PDB entry 8SRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	76	Right-handed alpha
Helix 2	AA2	A	118	135	Right-handed alpha
Helix 3	AA3	A	157	176	Right-handed alpha
Helix 4	AA4	A	187	203	Right-handed alpha
Helix 5	AA5	A	221	226	Right-handed alpha
Helix 6	AA6	A	271	286	Right-handed alpha
Helix 7	AA7	A	298	311	Right-handed alpha
Helix 8	AA8	A	322	336	Right-handed alpha
Helix 9	AA9	A	346	358	Right-handed alpha
Helix 10	AB1	A	362	377	Right-handed alpha
Helix 11	AB2	A	395	406	Right-handed alpha
Helix 12	AB3	A	410	422	Right-handed alpha
Helix 13	AB4	A	423	437	Right-handed alpha
Helix 14	AB5	A	439	446	Right-handed alpha
Helix 15	AB6	A	446	458	Right-handed alpha
Helix 16	AB7	A	459	469	Right-handed alpha
Helix 17	AB8	A	472	476	Right-handed 310
Helix 18	AB9	A	487	492	Right-handed alpha
Helix 19	AC1	A	494	508	Right-handed alpha
Helix 20	AC2	A	513	521	Right-handed alpha
Helix 21	AC3	A	556	569	Right-handed alpha
Helix 22	AC4	A	582	586	Right-handed 310
Helix 23	AC5	A	590	610	Right-handed alpha
Helix 24	AC6	A	612	622	Right-handed alpha
Helix 25	AC7	A	625	642	Right-handed alpha
Helix 26	AC8	A	643	647	Right-handed 310
Helix 27	AC9	A	652	680	Right-handed alpha
Helix 28	AD1	A	680	689	Right-handed alpha
Helix 29	AD2	A	692	696	Right-handed 310
Helix 30	AD3	A	699	707	Right-handed alpha
Helix 31	AD4	A	709	714	Right-handed alpha
Helix 32	AD5	A	715	726	Right-handed alpha
Helix 33	AD6	A	727	730	Right-handed 310
Helix 34	AD7	A	735	745	Right-handed alpha
Helix 35	AD8	A	788	799	Right-handed alpha
Helix 36	AD9	A	801	826	Right-handed alpha
Helix 37	AE1	A	833	855	Right-handed alpha
Helix 38	AE2	A	859	864	Right-handed alpha
Helix 39	AE3	A	866	889	Right-handed alpha
Helix 40	AE4	A	892	914	Right-handed alpha
Helix 41	AE5	A	915	921	Right-handed 310
Helix 42	AE6	A	924	961	Right-handed alpha
Helix 43	AE7	A	967	976	Right-handed alpha
Helix 44	AE8	A	976	981	Right-handed alpha
Helix 45	AE9	A	988	996	Right-handed alpha
Helix 46	AF1	A	1013	1026	Right-handed alpha
Helix 47	AF2	A	1028	1065	Right-handed alpha
Helix 48	AF3	A	1070	1087	Right-handed alpha
Helix 49	AF4	A	1102	1130	Right-handed alpha
Helix 50	AF5	A	1131	1168	Right-handed alpha
Helix 51	AF6	B	72	76	Right-handed alpha
Helix 52	AF7	B	118	135	Right-handed alpha
Helix 53	AF8	B	157	176	Right-handed alpha
Helix 54	AF9	B	187	203	Right-handed alpha
Helix 55	AG1	B	221	226	Right-handed alpha
Helix 56	AG2	B	271	286	Right-handed alpha
Helix 57	AG3	B	298	311	Right-handed alpha
Helix 58	AG4	B	322	336	Right-handed alpha
Helix 59	AG5	B	346	358	Right-handed alpha
Helix 60	AG6	B	362	377	Right-handed alpha
Helix 61	AG7	B	395	406	Right-handed alpha
Helix 62	AG8	B	410	422	Right-handed alpha
Helix 63	AG9	B	423	437	Right-handed alpha
Helix 64	AH1	B	439	446	Right-handed alpha
Helix 65	AH2	B	446	458	Right-handed alpha
Helix 66	AH3	B	459	469	Right-handed alpha
Helix 67	AH4	B	472	476	Right-handed 310
Helix 68	AH5	B	487	492	Right-handed alpha
Helix 69	AH6	B	494	508	Right-handed alpha
Helix 70	AH7	B	513	521	Right-handed alpha
Helix 71	AH8	B	556	569	Right-handed alpha
Helix 72	AH9	B	582	586	Right-handed 310
Helix 73	AI1	B	590	610	Right-handed alpha
Helix 74	AI2	B	612	622	Right-handed alpha
Helix 75	AI3	B	625	642	Right-handed alpha
Helix 76	AI4	B	643	647	Right-handed 310
Helix 77	AI5	B	652	680	Right-handed alpha
Helix 78	AI6	B	680	689	Right-handed alpha
Helix 79	AI7	B	692	696	Right-handed 310
Helix 80	AI8	B	699	707	Right-handed alpha
Helix 81	AI9	B	709	714	Right-handed alpha
Helix 82	AJ1	B	715	726	Right-handed alpha
Helix 83	AJ2	B	727	730	Right-handed 310
Helix 84	AJ3	B	735	745	Right-handed alpha
Helix 85	AJ4	B	788	799	Right-handed alpha
Helix 86	AJ5	B	801	826	Right-handed alpha
Helix 87	AJ6	B	833	855	Right-handed alpha
Helix 88	AJ7	B	859	864	Right-handed alpha
Helix 89	AJ8	B	866	889	Right-handed alpha
Helix 90	AJ9	B	892	914	Right-handed alpha
Helix 91	AK1	B	915	921	Right-handed 310
Helix 92	AK2	B	924	961	Right-handed alpha
Helix 93	AK3	B	967	976	Right-handed alpha
Helix 94	AK4	B	976	981	Right-handed alpha
Helix 95	AK5	B	988	996	Right-handed alpha
Helix 96	AK6	B	1013	1026	Right-handed alpha
Helix 97	AK7	B	1028	1065	Right-handed alpha
Helix 98	AK8	B	1070	1087	Right-handed alpha
Helix 99	AK9	B	1102	1130	Right-handed alpha
Helix 100	AL1	B	1131	1168	Right-handed alpha
Helix 101	AL2	C	72	76	Right-handed alpha
Helix 102	AL3	C	118	135	Right-handed alpha
Helix 103	AL4	C	157	176	Right-handed alpha
Helix 104	AL5	C	187	203	Right-handed alpha
Helix 105	AL6	C	221	226	Right-handed alpha
Helix 106	AL7	C	271	286	Right-handed alpha
Helix 107	AL8	C	298	311	Right-handed alpha
Helix 108	AL9	C	322	336	Right-handed alpha
Helix 109	AM1	C	346	358	Right-handed alpha
Helix 110	AM2	C	362	377	Right-handed alpha
Helix 111	AM3	C	395	406	Right-handed alpha
Helix 112	AM4	C	410	422	Right-handed alpha
Helix 113	AM5	C	423	437	Right-handed alpha
Helix 114	AM6	C	439	446	Right-handed alpha
Helix 115	AM7	C	446	458	Right-handed alpha
Helix 116	AM8	C	459	469	Right-handed alpha
Helix 117	AM9	C	472	476	Right-handed 310
Helix 118	AN1	C	487	492	Right-handed alpha
Helix 119	AN2	C	494	508	Right-handed alpha
Helix 120	AN3	C	513	521	Right-handed alpha
Helix 121	AN4	C	556	569	Right-handed alpha
Helix 122	AN5	C	582	586	Right-handed 310
Helix 123	AN6	C	590	610	Right-handed alpha
Helix 124	AN7	C	612	622	Right-handed alpha
Helix 125	AN8	C	625	642	Right-handed alpha
Helix 126	AN9	C	643	647	Right-handed 310
Helix 127	AO1	C	652	680	Right-handed alpha
Helix 128	AO2	C	680	689	Right-handed alpha
Helix 129	AO3	C	692	696	Right-handed 310
Helix 130	AO4	C	699	707	Right-handed alpha
Helix 131	AO5	C	709	714	Right-handed alpha
Helix 132	AO6	C	715	726	Right-handed alpha
Helix 133	AO7	C	727	730	Right-handed 310
Helix 134	AO8	C	735	745	Right-handed alpha
Helix 135	AO9	C	788	799	Right-handed alpha
Helix 136	AP1	C	801	826	Right-handed alpha
Helix 137	AP2	C	833	855	Right-handed alpha
Helix 138	AP3	C	859	864	Right-handed alpha
Helix 139	AP4	C	866	889	Right-handed alpha
Helix 140	AP5	C	892	914	Right-handed alpha
Helix 141	AP6	C	915	921	Right-handed 310
Helix 142	AP7	C	924	961	Right-handed alpha
Helix 143	AP8	C	967	976	Right-handed alpha
Helix 144	AP9	C	976	981	Right-handed alpha
Helix 145	AQ1	C	988	996	Right-handed alpha
Helix 146	AQ2	C	1013	1026	Right-handed alpha
Helix 147	AQ3	C	1028	1065	Right-handed alpha
Helix 148	AQ4	C	1070	1087	Right-handed alpha
Helix 149	AQ5	C	1102	1130	Right-handed alpha
Helix 150	AQ6	C	1131	1168	Right-handed alpha
Helix 151	AQ7	D	72	76	Right-handed alpha
Helix 152	AQ8	D	118	135	Right-handed alpha
Helix 153	AQ9	D	157	176	Right-handed alpha
Helix 154	AR1	D	187	203	Right-handed alpha
Helix 155	AR2	D	221	226	Right-handed alpha
Helix 156	AR3	D	271	286	Right-handed alpha
Helix 157	AR4	D	298	311	Right-handed alpha
Helix 158	AR5	D	322	336	Right-handed alpha
Helix 159	AR6	D	346	358	Right-handed alpha
Helix 160	AR7	D	362	377	Right-handed alpha
Helix 161	AR8	D	395	406	Right-handed alpha
Helix 162	AR9	D	410	422	Right-handed alpha
Helix 163	AS1	D	423	437	Right-handed alpha
Helix 164	AS2	D	439	446	Right-handed alpha
Helix 165	AS3	D	446	458	Right-handed alpha
Helix 166	AS4	D	459	469	Right-handed alpha
Helix 167	AS5	D	472	476	Right-handed 310
Helix 168	AS6	D	487	492	Right-handed alpha
Helix 169	AS7	D	494	508	Right-handed alpha
Helix 170	AS8	D	513	521	Right-handed alpha
Helix 171	AS9	D	556	569	Right-handed alpha
Helix 172	AT1	D	582	586	Right-handed 310
Helix 173	AT2	D	590	610	Right-handed alpha
Helix 174	AT3	D	612	622	Right-handed alpha
Helix 175	AT4	D	625	642	Right-handed alpha
Helix 176	AT5	D	643	647	Right-handed 310
Helix 177	AT6	D	652	680	Right-handed alpha
Helix 178	AT7	D	680	689	Right-handed alpha
Helix 179	AT8	D	692	696	Right-handed 310
Helix 180	AT9	D	699	707	Right-handed alpha
Helix 181	AU1	D	709	714	Right-handed alpha
Helix 182	AU2	D	715	726	Right-handed alpha
Helix 183	AU3	D	727	730	Right-handed 310
Helix 184	AU4	D	735	745	Right-handed alpha
Helix 185	AU5	D	788	799	Right-handed alpha
Helix 186	AU6	D	801	826	Right-handed alpha
Helix 187	AU7	D	833	855	Right-handed alpha
Helix 188	AU8	D	859	864	Right-handed alpha
Helix 189	AU9	D	866	889	Right-handed alpha
Helix 190	AV1	D	892	914	Right-handed alpha
Helix 191	AV2	D	915	921	Right-handed 310
Helix 192	AV3	D	924	961	Right-handed alpha
Helix 193	AV4	D	967	976	Right-handed alpha
Helix 194	AV5	D	976	981	Right-handed alpha
Helix 195	AV6	D	988	996	Right-handed alpha
Helix 196	AV7	D	1013	1026	Right-handed alpha
Helix 197	AV8	D	1028	1065	Right-handed alpha
Helix 198	AV9	D	1070	1087	Right-handed alpha
Helix 199	AW1	D	1102	1130	Right-handed alpha
Helix 200	AW2	D	1131	1168	Right-handed alpha

There are 12 sheets in PDB entry 8SRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	67	71	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	91	92	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	236	first strand
Strand 2	A	96	100	parallel
Strand 3	A	108	114	anti-parallel
Strand 4	A	256	261	parallel
Strand 5	A	210	215	parallel
Strand 6	A	178	181	parallel
Strand 7	A	144	149	parallel
Strand 8	A	290	295	parallel
Strand 9	A	315	318	parallel
Strand 10	A	383	386	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	67	71	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	91	92	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	236	first strand
Strand 2	B	96	100	parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	256	261	parallel
Strand 5	B	210	215	parallel
Strand 6	B	178	181	parallel
Strand 7	B	144	149	parallel
Strand 8	B	290	295	parallel
Strand 9	B	315	318	parallel
Strand 10	B	383	386	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	67	71	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	91	92	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	236	first strand
Strand 2	C	96	100	parallel
Strand 3	C	108	114	anti-parallel
Strand 4	C	256	261	parallel
Strand 5	C	210	215	parallel
Strand 6	C	178	181	parallel
Strand 7	C	144	149	parallel
Strand 8	C	290	295	parallel
Strand 9	C	315	318	parallel
Strand 10	C	383	386	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	67	71	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	91	92	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	236	first strand
Strand 2	D	96	100	parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	256	261	parallel
Strand 5	D	210	215	parallel
Strand 6	D	178	181	parallel
Strand 7	D	144	149	parallel
Strand 8	D	290	295	parallel
Strand 9	D	315	318	parallel
Strand 10	D	383	386	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SRJ