Analysis of interatomic Contacts of Structural Units in PDB entry:
8SRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SRO entry

There are 8 chains in PDB entry 8SRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 326GLU 412
D
 MET 328GLU 412
B
 HIS 326GLU 412
C
 ASN 327GLU 412
J
 A 13 A 30
I
 T 25 T 42
F
 A 13 A 30
E
 T 25 T 42
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8SRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
327 333Right-handed alpha
Helix 2
AA2
A
341 351Right-handed alpha
Helix 3
AA3
A
359 371Right-handed alpha
Helix 4
AA4
A
379 392Right-handed alpha
Helix 5
AA5
D
329 334Right-handed alpha
Helix 6
AA6
D
341 351Right-handed alpha
Helix 7
AA7
D
359 371Right-handed alpha
Helix 8
AA8
D
379 392Right-handed alpha
Helix 9
AA9
B
328 333Right-handed alpha
Helix 10
AB1
B
341 351Right-handed alpha
Helix 11
AB2
B
360 371Right-handed alpha
Helix 12
AB3
B
379 392Right-handed alpha
Helix 13
AB4
C
329 333Right-handed 310
Helix 14
AB5
C
341 351Right-handed alpha
Helix 15
AB6
C
359 371Right-handed alpha
Helix 16
AB7
C
379 392Right-handed alpha
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There are 4 sheets in PDB entry 8SRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 399first strand
Strand 2
A
404 408anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
395 399first strand
Strand 2
D
404 408anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
404 407anti-parallel
Strand 3
B
396 399anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
395 399first strand
Strand 2
C
404 408anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il