Analysis of interatomic Contacts of Structural Units in PDB entry:
8SS2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SS2 entry

There are 6 chains in PDB entry 8SS2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	GLU 1035
B	ASN 10	LYS 817
C	ASN 10	GLU 1035
D	ASN 10	LYS 817
E	ALA 2	SER 159
F	ALA 2	SER 159

There are132 helices in PDB entry 8SS2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	34	Right-handed alpha
Helix 2	AA2	A	54	67	Right-handed alpha
Helix 3	AA3	A	81	92	Right-handed alpha
Helix 4	AA4	A	117	129	Right-handed alpha
Helix 5	AA5	A	147	156	Right-handed alpha
Helix 6	AA6	A	172	181	Right-handed alpha
Helix 7	AA7	A	181	186	Right-handed alpha
Helix 8	AA8	A	197	211	Right-handed alpha
Helix 9	AA9	A	226	231	Right-handed 310
Helix 10	AB1	A	232	237	Right-handed alpha
Helix 11	AB2	A	252	264	Right-handed alpha
Helix 12	AB3	A	279	300	Right-handed alpha
Helix 13	AB4	A	307	311	Right-handed 310
Helix 14	AB5	A	325	335	Right-handed alpha
Helix 15	AB6	A	417	421	Right-handed 310
Helix 16	AB7	A	423	436	Right-handed alpha
Helix 17	AB8	A	461	466	Right-handed alpha
Helix 18	AB9	A	522	544	Right-handed alpha
Helix 19	AC1	A	580	585	Right-handed alpha
Helix 20	AC2	A	600	615	Right-handed alpha
Helix 21	AC3	A	616	624	Right-handed alpha
Helix 22	AC4	A	636	641	Right-handed alpha
Helix 23	AC5	A	653	661	Right-handed alpha
Helix 24	AC6	A	665	676	Right-handed alpha
Helix 25	AC7	A	685	696	Right-handed alpha
Helix 26	AC8	A	706	714	Right-handed alpha
Helix 27	AC9	A	743	748	Right-handed alpha
Helix 28	AD1	A	751	756	Right-handed alpha
Helix 29	AD2	A	757	767	Right-handed alpha
Helix 30	AD3	A	793	817	Right-handed alpha
Helix 31	AD4	A	834	857	Right-handed alpha
Helix 32	AD5	A	929	952	Right-handed alpha
Helix 33	AD6	A	958	986	Right-handed alpha
Helix 34	AD7	A	1005	1032	Right-handed alpha
Helix 35	AD8	B	23	35	Right-handed alpha
Helix 36	AD9	B	54	68	Right-handed alpha
Helix 37	AE1	B	81	92	Right-handed alpha
Helix 38	AE2	B	117	129	Right-handed alpha
Helix 39	AE3	B	145	150	Right-handed alpha
Helix 40	AE4	B	172	187	Right-handed alpha
Helix 41	AE5	B	197	210	Right-handed alpha
Helix 42	AE6	B	226	230	Right-handed 310
Helix 43	AE7	B	252	264	Right-handed alpha
Helix 44	AE8	B	279	300	Right-handed alpha
Helix 45	AE9	B	326	334	Right-handed alpha
Helix 46	AF1	B	423	436	Right-handed alpha
Helix 47	AF2	B	462	469	Right-handed alpha
Helix 48	AF3	B	482	487	Right-handed alpha
Helix 49	AF4	B	515	519	Right-handed 310
Helix 50	AF5	B	525	546	Right-handed alpha
Helix 51	AF6	B	572	585	Right-handed alpha
Helix 52	AF7	B	595	626	Right-handed alpha
Helix 53	AF8	B	636	641	Right-handed alpha
Helix 54	AF9	B	653	661	Right-handed alpha
Helix 55	AG1	B	665	677	Right-handed alpha
Helix 56	AG2	B	685	691	Right-handed alpha
Helix 57	AG3	B	706	713	Right-handed alpha
Helix 58	AG4	B	742	756	Right-handed alpha
Helix 59	AG5	B	757	768	Right-handed alpha
Helix 60	AG6	B	792	817	Right-handed alpha
Helix 61	AG7	C	22	34	Right-handed alpha
Helix 62	AG8	C	54	67	Right-handed alpha
Helix 63	AG9	C	81	92	Right-handed alpha
Helix 64	AH1	C	117	129	Right-handed alpha
Helix 65	AH2	C	147	156	Right-handed alpha
Helix 66	AH3	C	172	181	Right-handed alpha
Helix 67	AH4	C	181	186	Right-handed alpha
Helix 68	AH5	C	197	211	Right-handed alpha
Helix 69	AH6	C	226	231	Right-handed 310
Helix 70	AH7	C	232	237	Right-handed alpha
Helix 71	AH8	C	252	264	Right-handed alpha
Helix 72	AH9	C	279	300	Right-handed alpha
Helix 73	AI1	C	307	311	Right-handed 310
Helix 74	AI2	C	325	335	Right-handed alpha
Helix 75	AI3	C	417	421	Right-handed 310
Helix 76	AI4	C	423	436	Right-handed alpha
Helix 77	AI5	C	461	466	Right-handed alpha
Helix 78	AI6	C	522	544	Right-handed alpha
Helix 79	AI7	C	580	585	Right-handed alpha
Helix 80	AI8	C	600	615	Right-handed alpha
Helix 81	AI9	C	616	624	Right-handed alpha
Helix 82	AJ1	C	636	641	Right-handed alpha
Helix 83	AJ2	C	653	661	Right-handed alpha
Helix 84	AJ3	C	665	676	Right-handed alpha
Helix 85	AJ4	C	685	696	Right-handed alpha
Helix 86	AJ5	C	706	714	Right-handed alpha
Helix 87	AJ6	C	743	748	Right-handed alpha
Helix 88	AJ7	C	751	756	Right-handed alpha
Helix 89	AJ8	C	757	767	Right-handed alpha
Helix 90	AJ9	C	793	817	Right-handed alpha
Helix 91	AK1	C	834	857	Right-handed alpha
Helix 92	AK2	C	929	952	Right-handed alpha
Helix 93	AK3	C	958	986	Right-handed alpha
Helix 94	AK4	C	1005	1032	Right-handed alpha
Helix 95	AK5	D	23	35	Right-handed alpha
Helix 96	AK6	D	54	68	Right-handed alpha
Helix 97	AK7	D	81	92	Right-handed alpha
Helix 98	AK8	D	117	129	Right-handed alpha
Helix 99	AK9	D	145	150	Right-handed alpha
Helix 100	AL1	D	172	187	Right-handed alpha
Helix 101	AL2	D	197	210	Right-handed alpha
Helix 102	AL3	D	226	230	Right-handed 310
Helix 103	AL4	D	252	264	Right-handed alpha
Helix 104	AL5	D	279	300	Right-handed alpha
Helix 105	AL6	D	326	334	Right-handed alpha
Helix 106	AL7	D	423	436	Right-handed alpha
Helix 107	AL8	D	462	469	Right-handed alpha
Helix 108	AL9	D	482	487	Right-handed alpha
Helix 109	AM1	D	515	519	Right-handed 310
Helix 110	AM2	D	525	546	Right-handed alpha
Helix 111	AM3	D	572	585	Right-handed alpha
Helix 112	AM4	D	595	626	Right-handed alpha
Helix 113	AM5	D	636	641	Right-handed alpha
Helix 114	AM6	D	653	661	Right-handed alpha
Helix 115	AM7	D	665	677	Right-handed alpha
Helix 116	AM8	D	685	691	Right-handed alpha
Helix 117	AM9	D	706	713	Right-handed alpha
Helix 118	AN1	D	742	756	Right-handed alpha
Helix 119	AN2	D	757	768	Right-handed alpha
Helix 120	AN3	D	792	817	Right-handed alpha
Helix 121	AN4	E	4	18	Right-handed alpha
Helix 122	AN5	E	19	36	Right-handed alpha
Helix 123	AN6	E	57	67	Right-handed alpha
Helix 124	AN7	E	67	85	Right-handed alpha
Helix 125	AN8	E	87	105	Right-handed alpha
Helix 126	AN9	E	125	158	Right-handed alpha
Helix 127	AO1	F	4	18	Right-handed alpha
Helix 128	AO2	F	19	36	Right-handed alpha
Helix 129	AO3	F	57	67	Right-handed alpha
Helix 130	AO4	F	67	85	Right-handed alpha
Helix 131	AO5	F	87	105	Right-handed alpha
Helix 132	AO6	F	125	158	Right-handed alpha

There are 38 sheets in PDB entry 8SS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	47	first strand
Strand 2	A	11	17	parallel
Strand 3	A	72	75	parallel
Strand 4	A	96	98	parallel
Strand 5	A	110	112	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	367	370	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	343	344	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	380	382	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	443	444	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	732	733	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	735	736	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	705	first strand
Strand 2	A	500	505	anti-parallel
Strand 3	A	720	723	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	682	683	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	876	878	first strand
Strand 2	A	866	869	anti-parallel
Strand 3	A	997	999	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	890	first strand
Strand 2	A	900	901	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	110	112	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	242	246	parallel
Strand 3	B	358	361	anti-parallel
Strand 4	B	370	375	anti-parallel
Strand 5	B	378	381	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	343	345	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	399	first strand
Strand 2	B	440	444	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	732	733	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	47	first strand
Strand 2	C	11	17	parallel
Strand 3	C	72	75	parallel
Strand 4	C	96	98	parallel
Strand 5	C	110	112	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	359	364	anti-parallel
Strand 3	C	367	370	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	343	344	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	374	first strand
Strand 2	C	380	382	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	443	444	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	C	732	733	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	735	736	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	703	705	first strand
Strand 2	C	500	505	anti-parallel
Strand 3	C	720	723	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	650	first strand
Strand 2	C	682	683	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	876	878	first strand
Strand 2	C	866	869	anti-parallel
Strand 3	C	997	999	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	889	890	first strand
Strand 2	C	900	901	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	110	112	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	221	first strand
Strand 2	D	242	246	parallel
Strand 3	D	358	361	anti-parallel
Strand 4	D	370	375	anti-parallel
Strand 5	D	378	381	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	343	345	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	440	444	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	480	first strand
Strand 2	D	732	733	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SS2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SS2