Analysis of interatomic Contacts of Structural Units in PDB entry:
8SS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SS5 entry

There are 4 chains in PDB entry 8SS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 392	GLU 1035
B	GLN 392	ALA 820
C	GLN 392	GLU 1035
D	GLN 392	ALA 820

There are 70 helices in PDB entry 8SS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	423	437	Right-handed alpha
Helix 2	AA2	A	462	469	Right-handed alpha
Helix 3	AA3	A	482	487	Right-handed alpha
Helix 4	AA4	A	522	546	Right-handed alpha
Helix 5	AA5	A	572	585	Right-handed alpha
Helix 6	AA6	A	595	630	Right-handed alpha
Helix 7	AA7	A	635	642	Right-handed alpha
Helix 8	AA8	A	653	661	Right-handed alpha
Helix 9	AA9	A	664	676	Right-handed alpha
Helix 10	AB1	A	686	695	Right-handed alpha
Helix 11	AB2	A	706	714	Right-handed alpha
Helix 12	AB3	A	743	752	Right-handed alpha
Helix 13	AB4	A	757	767	Right-handed alpha
Helix 14	AB5	A	793	822	Right-handed alpha
Helix 15	AB6	A	834	858	Right-handed alpha
Helix 16	AB7	A	922	928	Right-handed alpha
Helix 17	AB8	A	929	952	Right-handed alpha
Helix 18	AB9	A	956	990	Right-handed alpha
Helix 19	AC1	A	1004	1033	Right-handed alpha
Helix 20	AC2	B	416	419	Right-handed 310
Helix 21	AC3	B	423	436	Right-handed alpha
Helix 22	AC4	B	461	470	Right-handed alpha
Helix 23	AC5	B	482	487	Right-handed alpha
Helix 24	AC6	B	515	519	Right-handed 310
Helix 25	AC7	B	522	547	Right-handed alpha
Helix 26	AC8	B	572	585	Right-handed alpha
Helix 27	AC9	B	595	626	Right-handed alpha
Helix 28	AD1	B	635	642	Right-handed alpha
Helix 29	AD2	B	653	662	Right-handed alpha
Helix 30	AD3	B	666	677	Right-handed alpha
Helix 31	AD4	B	686	696	Right-handed alpha
Helix 32	AD5	B	707	713	Right-handed alpha
Helix 33	AD6	B	742	757	Right-handed alpha
Helix 34	AD7	B	757	767	Right-handed alpha
Helix 35	AD8	B	793	820	Right-handed alpha
Helix 36	AD9	C	423	437	Right-handed alpha
Helix 37	AE1	C	462	469	Right-handed alpha
Helix 38	AE2	C	482	487	Right-handed alpha
Helix 39	AE3	C	522	546	Right-handed alpha
Helix 40	AE4	C	572	585	Right-handed alpha
Helix 41	AE5	C	595	630	Right-handed alpha
Helix 42	AE6	C	635	642	Right-handed alpha
Helix 43	AE7	C	653	661	Right-handed alpha
Helix 44	AE8	C	664	676	Right-handed alpha
Helix 45	AE9	C	686	695	Right-handed alpha
Helix 46	AF1	C	706	714	Right-handed alpha
Helix 47	AF2	C	743	752	Right-handed alpha
Helix 48	AF3	C	757	767	Right-handed alpha
Helix 49	AF4	C	793	822	Right-handed alpha
Helix 50	AF5	C	834	858	Right-handed alpha
Helix 51	AF6	C	922	928	Right-handed alpha
Helix 52	AF7	C	929	952	Right-handed alpha
Helix 53	AF8	C	956	990	Right-handed alpha
Helix 54	AF9	C	1004	1033	Right-handed alpha
Helix 55	AG1	D	416	419	Right-handed 310
Helix 56	AG2	D	423	436	Right-handed alpha
Helix 57	AG3	D	461	470	Right-handed alpha
Helix 58	AG4	D	482	487	Right-handed alpha
Helix 59	AG5	D	515	519	Right-handed 310
Helix 60	AG6	D	522	547	Right-handed alpha
Helix 61	AG7	D	572	585	Right-handed alpha
Helix 62	AG8	D	595	626	Right-handed alpha
Helix 63	AG9	D	635	642	Right-handed alpha
Helix 64	AH1	D	653	662	Right-handed alpha
Helix 65	AH2	D	666	677	Right-handed alpha
Helix 66	AH3	D	686	696	Right-handed alpha
Helix 67	AH4	D	707	713	Right-handed alpha
Helix 68	AH5	D	742	757	Right-handed alpha
Helix 69	AH6	D	757	767	Right-handed alpha
Helix 70	AH7	D	793	820	Right-handed alpha

There are 22 sheets in PDB entry 8SS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	441	444	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	735	736	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	705	first strand
Strand 2	A	500	505	anti-parallel
Strand 3	A	720	723	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	682	683	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	867	first strand
Strand 2	A	998	1002	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	440	442	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	736	737	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	730	731	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	705	first strand
Strand 2	B	500	505	anti-parallel
Strand 3	B	720	723	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	399	first strand
Strand 2	C	441	444	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	735	736	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	705	first strand
Strand 2	C	500	505	anti-parallel
Strand 3	C	720	723	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	650	first strand
Strand 2	C	682	683	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	863	867	first strand
Strand 2	C	998	1002	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	440	442	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	736	737	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	498	first strand
Strand 2	D	730	731	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	705	first strand
Strand 2	D	500	505	anti-parallel
Strand 3	D	720	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SS5